+ set -o Current option settings allexport on bgnice off braceexpand on clobber on emacs off errexit off exec on glob on globstar off gmacs off histexpand off ignoreeof off interactive off keyword off letoctal off log on login_shell off markdirs off monitor off multiline off notify off pipefail off privileged off rc off restricted off showme off trackall on unset off verbose off vi off viraw on xtrace on + INITIAL_DATE=2015061000 + export INITIAL_DATE + FIRST_FILTER_DATE=2015061006 + export FIRST_FILTER_DATE + FIRST_DART_INFLATE_DATE=2015061006 + export FIRST_DART_INFLATE_DATE + FIRST_EMISS_INV_DATE=2015061006 + export FIRST_EMISS_INV_DATE + CYCLE_STR_DATE=2015061000 + export CYCLE_STR_DATE + CYCLE_END_DATE=2015061218 + export CYCLE_END_DATE + CYCLE_DATE=2015061000 + export CYCLE_DATE + NL_FAC_OBS_ERROR_MOPITT=1.00 + export NL_FAC_OBS_ERROR_MOPITT + NL_FAC_OBS_ERROR_IASI=1.00 + export NL_FAC_OBS_ERROR_IASI + RETRIEVAL_TYPE_MOPITT=RETR + export RETRIEVAL_TYPE_MOPITT + RETRIEVAL_TYPE_IASI=RAWR + export RETRIEVAL_TYPE_IASI + PERT_CHEM_GENER=true + export PERT_CHEM_GENER + USE_LOG=false + export USE_LOG + [[ false == true ]] + CO_MIN=1.e-4 + export CO_MIN + CO_MAX=NULL + export CO_MAX + O3_MIN=0. + export O3_MIN + O3_MAX=NULL + export O3_MAX + USE_LOG_CO_LOGIC=.false. + export USE_LOG_CO_LOGIC + USE_LOG_O3_LOGIC=.false. + export USE_LOG_O3_LOGIC + NL_USE_CPSR_CO_TRUNC=.false. + export NL_USE_CPSR_CO_TRUNC + NL_CPSR_CO_TRUNC_LIM=4 + export NL_CPSR_CO_TRUNC_LIM + NL_USE_CPSR_O3_TRUNC=.false. + export NL_USE_CPSR_O3_TRUNC + NL_CPSR_O3_TRUNC_LIM=4 + export NL_CPSR_O3_TRUNC_LIM + NL_AIRNOW_O3_VLOC=0 + export NL_AIRNOW_O3_VLOC + NL_TOLNET_O3_VLOC=0 + export NL_TOLNET_O3_VLOC + VARLOC=.true. + export VARLOC + INDEP_CHEM_ASIM=.false. + export INDEP_CHEM_ASIM + ADD_EMISS=.false. + export ADD_EMISS + EMISS_DAMP_CYCLE=0.5 + export EMISS_DAMP_CYCLE + EMISS_DAMP_INTRA_CYCLE=0.5 + export EMISS_DAMP_INTRA_CYCLE + BAND_ISO_VAL_CO=.09 + RUN_FINE_SCALE=false + export RUN_FINE_SCALE + RUN_FINE_SCALE_RESTART=false + export RUN_FINE_SCALE_RESTART + RESTART_DATE=2014072312 + export RESTART_DATE + [[ false == true ]] + RUN_SPECIAL_FORECAST=false + export RUN_SPECIAL_FORECAST + NUM_SPECIAL_FORECAST=1 + export NUM_SPECIAL_FORECAST + SPECIAL_FORECAST_FAC=1. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=1./2. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=2./3. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_MEM[1]=5 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[2]=18 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[3]=22 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[4]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[5]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[6]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[7]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[8]=20 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[9]=21 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[10]=19 + export SPECIAL_FORECAST_MEM + RUN_INTERPOLATE=false + export RUN_INTERPOLATE + [[ 2015061000 -le 2015061218 ]] + DATE=2015061000 + export DATE + CYCLE_PERIOD=6 + export CYCLE_PERIOD + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + START_IASI_O3_DATA=2014060100 + export START_IASI_O3_DATA + END_IASI_O3_DATA=2014073118 + export END_IASI_O3_DATA + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + echo 2015061000 + cut -c1-4 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061000 + YY=15 + export YY + cut -c5-6 + echo 2015061000 + MM=06 + export MM + cut -c7-8 + echo 2015061000 + DD=10 + export DD + cut -c9-10 + echo 2015061000 + HH=00 + export HH + DATE_SHORT=15061000 + export DATE_SHORT + FILE_DATE=2015-06-10_00:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -6 + 2> /dev/null + PAST_DATE=2015060918 + export PAST_DATE + cut -c1-4 + echo 2015060918 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015060918 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015060918 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015060918 + PAST_DD=09 + export PAST_DD + cut -c9-10 + echo 2015060918 + PAST_HH=18 + export PAST_HH + PAST_FILE_DATE=2015-06-09_18:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +6 + 2> /dev/null + NEXT_DATE=2015061006 + export NEXT_DATE + cut -c1-4 + echo 2015061006 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061006 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061006 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061006 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061006 + NEXT_HH=06 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_06:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=00 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 00 + 0 )) + [[ 00 -eq 0 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -1 + 2> /dev/null + TMP_DATE=2015060923 + export TMP_DATE + cut -c1-4 + echo 2015060923 + TMP_YYYY=2015 + export TMP_YYYY + cut -c3-4 + echo 2015060923 + TMP_YY=15 + export TMP_YY + cut -c5-6 + echo 2015060923 + TMP_MM=06 + export TMP_MM + cut -c7-8 + echo 2015060923 + TMP_DD=09 + export TMP_DD + cut -c9-10 + echo 2015060923 + TMP_HH=23 + export TMP_HH + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=09 + export D_DD + D_HH=24 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 09 + 0 )) + (( DD_HH = 24 + 0 )) + D_DATE=2015060924 + export D_DATE + echo 2015061000 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 0 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=0 + export SEC_GREG + echo 2015061006 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 21600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=21600 + export NEXT_SEC_GREG + ASIM_WINDOW=3 + export ASIM_WINDOW + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -3 + 2> /dev/null + ASIM_MIN_DATE=2015060921 + export ASIM_MIN_DATE + cut -c1-4 + echo 2015060921 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 2015060921 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 2015060921 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 2015060921 + ASIM_MIN_DD=09 + export ASIM_MIN_DD + cut -c9-10 + echo 2015060921 + ASIM_MIN_HH=21 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +3 + 2> /dev/null + ASIM_MAX_DATE=2015061003 + export ASIM_MAX_DATE + cut -c1-4 + echo 2015061003 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 2015061003 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 2015061003 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 2015061003 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 2015061003 + ASIM_MAX_HH=03 + export ASIM_MAX_HH + echo 2015060921 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151369 75600 + ASIM_MIN_DAY_GREG=151369 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=75600 + export ASIM_MIN_SEC_GREG + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 10800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=10800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_GEOGRID=true + export RUN_GEOGRID + RUN_UNGRIB=true + export RUN_UNGRIB + RUN_METGRID=true + export RUN_METGRID + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061000 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + FCST_PERIOD=6 + export FCST_PERIOD + (( CYCLE_PERIOD_SEC=6*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + MAX_DOMAINS=02 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + FR_DOMAIN=02 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_FR=255 + export NNXP_FR + NNYP_FR=228 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_FR=255+1 )) + (( NNYP_STAG_FR=228+1 )) + (( NNZP_STAG_FR=36+1 )) + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_FR=80 + export ISTR_FR + JSTR_FR=45 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_FR=9000 + export DX_FR + (( LBC_END=48 )) + LBC_FREQ=3 + export LBC_FREQ + (( INTERVAL_SECONDS=3*60*60 )) + LBC_START=0 + export LBC_START + START_DATE=2015061000 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + END_DATE=2015061006 + export END_DATE + cut -c1-4 + echo 2015061000 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061000 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061000 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061000 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061000 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-10_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061006 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061006 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061006 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061006 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-10_06:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + export GEOGRID_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid + export METGRID_DIR + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015060918/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=6 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=00,00 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=10800 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60480,60480 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=120 + export NL_TIME_STEP + NNL_TIME_STEP=120 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-09_21:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:00:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 2015060921 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151369 75600 + (( temp[1]=75600+1 )) + NL_FIRST_OBS_DAYS=151369 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=75601 + export NL_FIRST_OBS_SECONDS + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 10800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=10800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061000 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=21600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=0 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=0 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=21600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -3 + 2> /dev/null + ASIM_DATE_MIN=2015060921 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +3 + 2> /dev/null + ASIM_DATE_MAX=2015061003 + export ASIM_DATE_MAX + cut -c1-4 + echo 2015060921 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 2015060921 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 2015060921 + ASIM_MN_DD=09 + export ASIM_MN_DD + cut -c9-10 + echo 2015060921 + ASIM_MN_HH=21 + export ASIM_MN_HH + cut -c1-4 + echo 2015061003 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 2015061003 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 2015061003 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 2015061003 + ASIM_MX_HH=03 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + E_DATE=2015061006 + export E_DATE + cut -c1-4 + echo 2015061006 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061006 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061006 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061006 + E_HH=06 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid.exe ./. + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_START_DATE=2015-06-10_00:00:00 + export NL_START_DATE + NL_END_DATE=2015-06-10_06:00:00 + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_geogrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_geogrid normal+ 01:40:00 1 1 geogrid.exe SERIAL + JOBID=19424_geogrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=geogrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=42915 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_geogrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_geogrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./geogrid.exe > index_31900.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1120968 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ungrib + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ungrib + rm -rf 'GRIBFILE.*' + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables/Vtable.GFS Vtable + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib.exe ./. + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 48 + 2> /dev/null + L_END_DATE=2015061200 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061200 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061200 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061200 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061200 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061200 + cut -c1-4 + echo 2015061200 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061200 + cut -c5-6 + echo 2015061200 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061200 + cut -c7-8 + echo 2015061200 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061200 + cut -c9-10 + echo 2015061200 + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_00:00:00\',\'2015-06-12_00:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + FILES='' + [[ -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts ]] + [[ false == false ]] + CCHH=00 + export CCHH + (( LBC_ITR=0 )) + [[ 0 -le 48 ]] + [[ 0 -lt 1000 ]] + CFTM=0 + export CFTM + [[ 0 -lt 100 ]] + CFTM=00 + export CFTM + [[ 0 -lt 10 ]] + CFTM=000 + export CFTM + [[ 0 -eq 0 ]] + CFTM=000 + export CFTM + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2' + (( LBC_ITR=0+3 )) + [[ 3 -le 48 ]] + [[ 3 -lt 1000 ]] + CFTM=3 + export CFTM + [[ 3 -lt 100 ]] + CFTM=03 + export CFTM + [[ 3 -lt 10 ]] + CFTM=003 + export CFTM + [[ 3 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2' + (( LBC_ITR=3+3 )) + [[ 6 -le 48 ]] + [[ 6 -lt 1000 ]] + CFTM=6 + export CFTM + [[ 6 -lt 100 ]] + CFTM=06 + export CFTM + [[ 6 -lt 10 ]] + CFTM=006 + export CFTM + [[ 6 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2' + (( LBC_ITR=6+3 )) + [[ 9 -le 48 ]] + [[ 9 -lt 1000 ]] + CFTM=9 + export CFTM + [[ 9 -lt 100 ]] + CFTM=09 + export CFTM + [[ 9 -lt 10 ]] + CFTM=009 + export CFTM + [[ 9 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2' + (( LBC_ITR=9+3 )) + [[ 12 -le 48 ]] + [[ 12 -lt 1000 ]] + CFTM=12 + export CFTM + [[ 12 -lt 100 ]] + CFTM=012 + export CFTM + [[ 12 -lt 10 ]] + [[ 12 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2' + (( LBC_ITR=12+3 )) + [[ 15 -le 48 ]] + [[ 15 -lt 1000 ]] + CFTM=15 + export CFTM + [[ 15 -lt 100 ]] + CFTM=015 + export CFTM + [[ 15 -lt 10 ]] + [[ 15 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2' + (( LBC_ITR=15+3 )) + [[ 18 -le 48 ]] + [[ 18 -lt 1000 ]] + CFTM=18 + export CFTM + [[ 18 -lt 100 ]] + CFTM=018 + export CFTM + [[ 18 -lt 10 ]] + [[ 18 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2' + (( LBC_ITR=18+3 )) + [[ 21 -le 48 ]] + [[ 21 -lt 1000 ]] + CFTM=21 + export CFTM + [[ 21 -lt 100 ]] + CFTM=021 + export CFTM + [[ 21 -lt 10 ]] + [[ 21 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2' + (( LBC_ITR=21+3 )) + [[ 24 -le 48 ]] + [[ 24 -lt 1000 ]] + CFTM=24 + export CFTM + [[ 24 -lt 100 ]] + CFTM=024 + export CFTM + [[ 24 -lt 10 ]] + [[ 24 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2' + (( LBC_ITR=24+3 )) + [[ 27 -le 48 ]] + [[ 27 -lt 1000 ]] + CFTM=27 + export CFTM + [[ 27 -lt 100 ]] + CFTM=027 + export CFTM + [[ 27 -lt 10 ]] + [[ 27 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2' + (( LBC_ITR=27+3 )) + [[ 30 -le 48 ]] + [[ 30 -lt 1000 ]] + CFTM=30 + export CFTM + [[ 30 -lt 100 ]] + CFTM=030 + export CFTM + [[ 30 -lt 10 ]] + [[ 30 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2' + (( LBC_ITR=30+3 )) + [[ 33 -le 48 ]] + [[ 33 -lt 1000 ]] + CFTM=33 + export CFTM + [[ 33 -lt 100 ]] + CFTM=033 + export CFTM + [[ 33 -lt 10 ]] + [[ 33 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2' + (( LBC_ITR=33+3 )) + [[ 36 -le 48 ]] + [[ 36 -lt 1000 ]] + CFTM=36 + export CFTM + [[ 36 -lt 100 ]] + CFTM=036 + export CFTM + [[ 36 -lt 10 ]] + [[ 36 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f036.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f036.grib2' + (( LBC_ITR=36+3 )) + [[ 39 -le 48 ]] + [[ 39 -lt 1000 ]] + CFTM=39 + export CFTM + [[ 39 -lt 100 ]] + CFTM=039 + export CFTM + [[ 39 -lt 10 ]] + [[ 39 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f039.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f039.grib2' + (( LBC_ITR=39+3 )) + [[ 42 -le 48 ]] + [[ 42 -lt 1000 ]] + CFTM=42 + export CFTM + [[ 42 -lt 100 ]] + CFTM=042 + export CFTM + [[ 42 -lt 10 ]] + [[ 42 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f042.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f042.grib2' + (( LBC_ITR=42+3 )) + [[ 45 -le 48 ]] + [[ 45 -lt 1000 ]] + CFTM=45 + export CFTM + [[ 45 -lt 100 ]] + CFTM=045 + export CFTM + [[ 45 -lt 10 ]] + [[ 45 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f045.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f045.grib2' + (( LBC_ITR=45+3 )) + [[ 48 -le 48 ]] + [[ 48 -lt 1000 ]] + CFTM=48 + export CFTM + [[ 48 -lt 100 ]] + CFTM=048 + export CFTM + [[ 48 -lt 10 ]] + [[ 48 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f048.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f048.grib2' + (( LBC_ITR=48+3 )) + [[ 51 -le 48 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/link_grib.csh /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061000.f048.grib2 + RANDOM=42773 + JOBRND=19424_ungrib + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_ungrib normal+ 01:40:00 1 1 ungrib.exe SERIAL + JOBID=19424_ungrib + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=ungrib.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=43043 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_ungrib #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_ungrib.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./ungrib.exe > index_14455.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1120969 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d01.nc ./. + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d02.nc ./. + ln -fs ../ungrib/FILE:2015-06-10_00 ../ungrib/FILE:2015-06-10_03 ../ungrib/FILE:2015-06-10_06 ../ungrib/FILE:2015-06-10_09 ../ungrib/FILE:2015-06-10_12 ../ungrib/FILE:2015-06-10_15 ../ungrib/FILE:2015-06-10_18 ../ungrib/FILE:2015-06-10_21 ../ungrib/FILE:2015-06-11_00 ../ungrib/FILE:2015-06-11_03 ../ungrib/FILE:2015-06-11_06 ../ungrib/FILE:2015-06-11_09 ../ungrib/FILE:2015-06-11_12 ../ungrib/FILE:2015-06-11_15 ../ungrib/FILE:2015-06-11_18 ../ungrib/FILE:2015-06-11_21 ../ungrib/FILE:2015-06-12_00 ./. + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid/METGRID.TBL.ARW METGRID.TBL + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid.exe . + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 48 + 2> /dev/null + L_END_DATE=2015061200 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061200 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061200 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061200 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061200 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061200 + cut -c1-4 + echo 2015061200 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061200 + cut -c5-6 + echo 2015061200 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061200 + cut -c7-8 + echo 2015061200 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061200 + cut -c9-10 + echo 2015061200 + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_00:00:00\',\'2015-06-12_00:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_metgrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_metgrid normal+ 01:40:00 1 1 metgrid.exe SERIAL + JOBID=19424_metgrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=metgrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=43539 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_metgrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_metgrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./metgrid.exe > index_2841.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1120983 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 48 + 2> /dev/null + P_END_DATE=2015061200 + export P_END_DATE + [[ 2015061000 -le 2015061200 ]] + cut -c1-4 + echo 2015061000 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061000 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061000 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061000 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-10_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061200 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061200 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061200 ]] + cut -c1-4 + echo 2015061009 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061009 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061009 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061009 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-10_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061200 ]] + cut -c1-4 + echo 2015061012 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061012 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061012 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061012 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-10_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061200 ]] + cut -c1-4 + echo 2015061015 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061015 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061015 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061015 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-10_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061200 ]] + cut -c1-4 + echo 2015061018 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061018 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061018 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061018 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-10_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061200 ]] + cut -c1-4 + echo 2015061021 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061021 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061021 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061021 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-10_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-10_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061200 ]] + cut -c1-4 + echo 2015061100 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061100 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061100 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061100 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-11_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061200 ]] + cut -c1-4 + echo 2015061103 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061103 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061103 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061103 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-11_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061200 ]] + cut -c1-4 + echo 2015061106 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061106 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061106 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061106 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-11_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061200 ]] + cut -c1-4 + echo 2015061109 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061109 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061109 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061109 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-11_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061200 ]] + cut -c1-4 + echo 2015061112 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061112 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061112 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061112 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-11_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061200 ]] + cut -c1-4 + echo 2015061115 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061115 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061115 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061115 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-11_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061115 3 + 2> /dev/null + P_DATE=2015061118 + export P_DATE + [[ 2015061118 -le 2015061200 ]] + cut -c1-4 + echo 2015061118 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061118 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061118 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061118 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-11_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061118 3 + 2> /dev/null + P_DATE=2015061121 + export P_DATE + [[ 2015061121 -le 2015061200 ]] + cut -c1-4 + echo 2015061121 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061121 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061121 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061121 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-11_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-11_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061121 3 + 2> /dev/null + P_DATE=2015061200 + export P_DATE + [[ 2015061200 -le 2015061200 ]] + cut -c1-4 + echo 2015061200 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061200 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061200 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061200 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-12_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-12_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d02.2015-06-12_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061200 3 + 2> /dev/null + P_DATE=2015061203 + export P_DATE + [[ 2015061203 -le 2015061200 ]] + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061000 -le 2015061006 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=43871 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_27904.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1120996 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061006 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 6 + 2> /dev/null + L_END_DATE=2015061009 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061009 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061009 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061009 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061009 + L_END_HOUR=09 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_END_HOUR=09,09 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=43960 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_23140.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121001 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061012 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061012 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061012 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061012 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44166 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_21034.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121005 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061006 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=6 + export L_FCST_RANGE + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061000 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_00:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-09_21:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44279 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_170.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121007 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44307 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5866.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121008 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44334 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29751.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121009 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44362 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24977.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121010 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44390 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2472.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121011 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44417 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17147.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121012 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44445 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30903.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121013 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44473 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5737.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121014 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44500 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121015 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_21:00:00', / &wrfvar22 time_window_max = '2015-06-10_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44528 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16507.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121016 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_00:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_170.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44636 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4026.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121017 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5866.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44664 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28222.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121018 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29751.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44692 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26030.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121019 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24977.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44720 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121020 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2472.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44748 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_793.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121021 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17147.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44776 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14154.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121022 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30903.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44803 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23734.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121023 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5737.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44831 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7722.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121024 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28176.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44859 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24328.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121025 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16507.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:00:00', / &wrfvar22 time_window_max = '2015-06-10_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=44887 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13932.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121026 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4026.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45111 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4219.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121027 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28222.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45139 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19721.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121028 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26030.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45167 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31565.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121029 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6325.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45195 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4689.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121030 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_793.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45227 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1808.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121031 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14154.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45255 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25141.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121032 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23734.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45283 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16686.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121033 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7722.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45310 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21503.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121034 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24328.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45338 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20805.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121035 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13932.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=45366 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3714.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121036 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061006 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=45626 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28288.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121038 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=45638 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6696.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121039 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=45848 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31581.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121040 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=45861 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1177.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121041 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46072 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19168.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121042 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46085 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13239.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121043 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46295 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26834.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121044 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46307 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15600.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121045 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46524 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27346.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121046 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46536 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27779.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121047 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46747 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2289.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121048 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46759 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31357.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121049 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46972 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11192.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121050 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=46984 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23513.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121051 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=47195 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14770.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121052 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=47207 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18509.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121053 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=47422 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121054 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=47434 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29356.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121055 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75601, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=42773 + [[ 2015061000 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=47645 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21035.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121056 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=47657 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18677.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121057 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061000 -le 2015061006 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061000 -eq 2015061000 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=48117 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_6107.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121058 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_00:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061006 -eq 2015061000 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=49989 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_17754.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121061 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_06:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=42773 + JOBRND=19424_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=19424_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=51772 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_32043.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121077 + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_00:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_00:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_00:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_00:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_01:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_01:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_02:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_02:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_03:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_03:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_04:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_04:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_05:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_05:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_06:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_06:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061000 -le 2015061006 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_00:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_01:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_02:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/metgrid/met_em.d01.2015-06-12_00:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=42773 + JOBRND=19424_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 19424_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour true export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121078 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_00:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_00:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 ./. + mv wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e000 + mv wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_d01_2015-06-10_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.52444 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.52444 rm -f tmp.52444 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set files = ( wrfinput_d01_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.52527 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.52527 rm -f tmp.52527 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.52527 rm -f tmp.52527 if ( wrfinput_d01_2015-06-10_00:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00.e000 echo wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00.e000 ln -s wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00 + mv wrfbdy_d01_2015-06-10_00:00:00.e000 wrfbdy_d01_2015-06-10_00:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.52616 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.52616 rm -f tmp.52616 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e001 set files = ( wrfinput_d01_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.52813 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.52813 rm -f tmp.52813 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.52813 rm -f tmp.52813 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.52898 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.52898 rm -f tmp.52898 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e002 set files = ( wrfinput_d01_2015-06-10_00:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.52970 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.52970 rm -f tmp.52970 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.52970 rm -f tmp.52970 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53059 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.53059 rm -f tmp.53059 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e003 set files = ( wrfinput_d01_2015-06-10_00:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53133 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.53133 rm -f tmp.53133 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.53133 rm -f tmp.53133 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53217 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.53217 rm -f tmp.53217 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e004 set files = ( wrfinput_d01_2015-06-10_00:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53290 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.53290 rm -f tmp.53290 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.53290 rm -f tmp.53290 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53375 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.53375 rm -f tmp.53375 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e005 set files = ( wrfinput_d01_2015-06-10_00:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53448 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.53448 rm -f tmp.53448 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.53448 rm -f tmp.53448 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53536 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.53536 rm -f tmp.53536 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e006 set files = ( wrfinput_d01_2015-06-10_00:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53613 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.53613 rm -f tmp.53613 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.53613 rm -f tmp.53613 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53698 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.53698 rm -f tmp.53698 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e007 set files = ( wrfinput_d01_2015-06-10_00:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53771 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.53771 rm -f tmp.53771 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.53771 rm -f tmp.53771 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53856 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.53856 rm -f tmp.53856 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e008 set files = ( wrfinput_d01_2015-06-10_00:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.53928 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.53928 rm -f tmp.53928 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.53928 rm -f tmp.53928 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.54017 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.54017 rm -f tmp.54017 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e009 set files = ( wrfinput_d01_2015-06-10_00:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.54091 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.54091 rm -f tmp.54091 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.54091 rm -f tmp.54091 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.54175 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.54175 rm -f tmp.54175 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e010 set files = ( wrfinput_d01_2015-06-10_00:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.54248 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.54248 rm -f tmp.54248 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.54248 rm -f tmp.54248 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e010 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_d01_2015-06-10_00:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01_2015-06-10_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01_2015-06-10_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01_2015-06-10_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01_2015-06-10_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01_2015-06-10_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01_2015-06-10_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01_2015-06-10_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01_2015-06-10_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061000 -le 2015061006 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_00:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_00:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=54788 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_14077.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121079 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=54985 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25069.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121080 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=55182 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21762.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121081 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=55506 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2565.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121082 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=55704 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_31806.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121083 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=55903 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_32514.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121084 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=56130 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_31690.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121085 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 00 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=09 + export L_DD + L_HH=24 + export L_HH + D_DATE=2015060924 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=09 + export NL_DAY + NL_HOUR=24 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=09 hour0=24 beg_year=2015 beg_mon=06 beg_day=09 beg_hour=21 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=03 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061000.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061000.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=00 + export L_HH + D_DATE=2015061000 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=00 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=00 beg_year=2015 beg_mon=06 beg_day=09 beg_hour=21 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=03 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061000.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + touch NO_DATA_2015061000 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/prepbufr_met_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/prepbufr_met_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/prepbufr_met_obs + L_DATE=2015060906 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060906 +24 + 2> /dev/null + E_DATE=2015061006 + export E_DATE + [[ 2015060906 -le 2015061006 ]] + cut -c1-4 + echo 2015060906 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015060906 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015060906 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015060906 + L_DD=09 + export L_DD + cut -c9-10 + echo 2015060906 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t06z.nr prepqm15060906 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t06z.nr’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060906 +6 + 2> /dev/null + L_DATE=2015060912 + export L_DATE + [[ 2015060912 -le 2015061006 ]] + cut -c1-4 + echo 2015060912 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015060912 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015060912 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015060912 + L_DD=09 + export L_DD + cut -c9-10 + echo 2015060912 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t12z.nr prepqm15060912 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t12z.nr’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060912 +6 + 2> /dev/null + L_DATE=2015060918 + export L_DATE + [[ 2015060918 -le 2015061006 ]] + cut -c1-4 + echo 2015060918 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015060918 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015060918 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015060918 + L_DD=09 + export L_DD + cut -c9-10 + echo 2015060918 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t18z.nr prepqm15060918 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150609.t18z.nr’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015060918 +6 + 2> /dev/null + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr prepqm15061000 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +6 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061006 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 9 9 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 09, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061000 obs_seq_prep_2015061000.out mv: cannot stat ‘obs_seq2015061000’: No such file or directory + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/prepbufr_met_obs/obs_seq_prep_2015061000.out ]] + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/airnow_o3_obs/obs_seq_airnow_o3_2015061000.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/airnow_o3_obs/obs_seq_airnow_o3_2015061000.out ./obs_seq_AIR_O3_2015061000.out + (( NUM_FILES=0+1 )) + FILE_LIST[1]=obs_seq_AIR_O3_2015061000.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/tolnet_o3_obs/obs_seq_tolnet_o3_2015061000.out ]] + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + [[ 1 -eq 8 ]] + [[ 1 -eq 7 ]] + [[ 1 -eq 6 ]] + [[ 1 -eq 5 ]] + [[ 1 -eq 4 ]] + [[ 1 -eq 3 ]] + [[ 1 -eq 2 ]] + [[ 1 -eq 1 ]] + NL_FILENAME_SEQ=$'\'obs_seq_AIR_O3_2015061000.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151369 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=75600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=10800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 1 filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151369, first_obs_seconds = 75600, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 4 13 24 16 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151369, sec=75600 which is Gregorian day: 2015 Jun 09 21:00:00 Excluding observations after: day=151370, sec=10800 which is Gregorian day: 2015 Jun 10 03:00:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061000.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 5720 Number of obs really inserted : 5720 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 5720 Actual number of obs in the new seq file : 5720 Processing sequence file obs_seq.proc Data Metadata: AIRNOW observation QC Metadata: AIRNOW QC index First obs time: day=151369, sec=79200 Gregorian day: 2015 Jun 09 22:00:00 Last obs time: day=151370, sec=10800 Gregorian day: 2015 Jun 10 03:00:00 Number of obs processed : 5720 --------------------------------------------------------- AIRNOW_O3 5720 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 4 13 24 16 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061000.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75600, last_obs_days = 151370, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151369, first_obs_seconds = 75600, last_obs_days = 151370, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 75600, last_obs_days = 151370, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/combine_obs/obs_seq_comb_2015061000.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=42773 + JOBRND=19424_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 19424_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 0 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121086 + mv obs_seq.new obs_seq_comb_filtered_2015061000.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + TRANDOM=42773 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e001 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e001 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=57284 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_8156.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121091 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e002 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e002 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e002 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e002 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e002 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e002 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=57441 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_17979.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121092 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e003 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e003 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e003 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e003 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e003 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e003 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=57596 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_2616.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121093 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e004 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e004 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e004 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e004 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e004 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e004 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=57749 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20695.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121094 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e005 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e005 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e005 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e005 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e005 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e005 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=57902 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30828.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121095 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e006 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e006 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e006 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e006 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e006 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e006 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=58054 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29002.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121096 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e007 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e007 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e007 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e007 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e007 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e007 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=58215 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_18917.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121097 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e008 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e008 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e008 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e008 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e008 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e008 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=58368 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_17673.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121098 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e009 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e009 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e009 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e009 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e009 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e009 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=58522 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25220.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121099 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061006 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e010 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e010 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e010 wrfchemi_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061006 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e010 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e010 wrfchemi_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061006 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061006 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061006 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e010 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=58675 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25303.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121100 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/ensemble_mean_output + [[ 2015061000 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export OUTPUT_DIR + rm -rf 'wrfout_d01_*' + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 6 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061000 -le 2015061006 ]] + cut -c1-4 + echo 2015061000 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061000 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061000 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061000 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-10_00:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061000_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061006 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061001_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061006 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061002_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061006 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061003_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061006 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061004_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061005_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061006_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + CYCLE_DATE=2015061006 + export CYCLE_DATE + [[ 2015061006 -le 2015061218 ]] + DATE=2015061006 + export DATE + CYCLE_PERIOD=6 + export CYCLE_PERIOD + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + START_IASI_O3_DATA=2014060100 + export START_IASI_O3_DATA + END_IASI_O3_DATA=2014073118 + export END_IASI_O3_DATA + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cut -c1-4 + echo 2015061006 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061006 + YY=15 + export YY + cut -c5-6 + echo 2015061006 + MM=06 + export MM + cut -c7-8 + echo 2015061006 + DD=10 + export DD + cut -c9-10 + echo 2015061006 + HH=06 + export HH + DATE_SHORT=15061006 + export DATE_SHORT + FILE_DATE=2015-06-10_06:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -6 + 2> /dev/null + PAST_DATE=2015061000 + export PAST_DATE + cut -c1-4 + echo 2015061000 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061000 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061000 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061000 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061000 + PAST_HH=00 + export PAST_HH + PAST_FILE_DATE=2015-06-10_00:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + NEXT_DATE=2015061012 + export NEXT_DATE + cut -c1-4 + echo 2015061012 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061012 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061012 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061012 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061012 + NEXT_HH=12 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_12:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=06 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 06 + 0 )) + [[ 06 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=06 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 06 + 0 )) + D_DATE=2015061006 + export D_DATE + echo 2015061006 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 21600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=21600 + export SEC_GREG + echo 2015061012 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 43200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=43200 + export NEXT_SEC_GREG + ASIM_WINDOW=3 + export ASIM_WINDOW + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -3 + 2> /dev/null + ASIM_MIN_DATE=2015061003 + export ASIM_MIN_DATE + cut -c1-4 + echo 2015061003 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 2015061003 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 2015061003 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 2015061003 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 2015061003 + ASIM_MIN_HH=03 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +3 + 2> /dev/null + ASIM_MAX_DATE=2015061009 + export ASIM_MAX_DATE + cut -c1-4 + echo 2015061009 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 2015061009 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 2015061009 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 2015061009 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 2015061009 + ASIM_MAX_HH=09 + export ASIM_MAX_HH + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 10800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=10800 + export ASIM_MIN_SEC_GREG + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 32400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=32400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_GEOGRID=true + export RUN_GEOGRID + RUN_UNGRIB=true + export RUN_UNGRIB + RUN_METGRID=true + export RUN_METGRID + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061006 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + FCST_PERIOD=6 + export FCST_PERIOD + (( CYCLE_PERIOD_SEC=6*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + MAX_DOMAINS=02 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + FR_DOMAIN=02 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_FR=255 + export NNXP_FR + NNYP_FR=228 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_FR=255+1 )) + (( NNYP_STAG_FR=228+1 )) + (( NNZP_STAG_FR=36+1 )) + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_FR=80 + export ISTR_FR + JSTR_FR=45 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_FR=9000 + export DX_FR + (( LBC_END=48 )) + LBC_FREQ=3 + export LBC_FREQ + (( INTERVAL_SECONDS=3*60*60 )) + LBC_START=0 + export LBC_START + START_DATE=2015061006 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + END_DATE=2015061012 + export END_DATE + cut -c1-4 + echo 2015061006 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061006 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061006 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061006 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061006 + START_HOUR=06 + export START_HOUR + START_FILE_DATE=2015-06-10_06:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061012 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061012 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061012 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061012 + END_HOUR=12 + export END_HOUR + END_FILE_DATE=2015-06-10_12:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + export GEOGRID_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid + export METGRID_DIR + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=6 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=06,06 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=10800 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60480,60480 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=120 + export NL_TIME_STEP + NNL_TIME_STEP=120 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:00:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 10800 + (( temp[1]=10800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=10801 + export NL_FIRST_OBS_SECONDS + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 32400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=32400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061006 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=21600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=6 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=6 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=43200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -3 + 2> /dev/null + ASIM_DATE_MIN=2015061003 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +3 + 2> /dev/null + ASIM_DATE_MAX=2015061009 + export ASIM_DATE_MAX + cut -c1-4 + echo 2015061003 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 2015061003 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 2015061003 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 2015061003 + ASIM_MN_HH=03 + export ASIM_MN_HH + cut -c1-4 + echo 2015061009 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 2015061009 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 2015061009 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 2015061009 + ASIM_MX_HH=09 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + E_DATE=2015061012 + export E_DATE + cut -c1-4 + echo 2015061012 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061012 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061012 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061012 + E_HH=12 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid.exe ./. + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_START_DATE=2015-06-10_06:00:00 + export NL_START_DATE + NL_END_DATE=2015-06-10_12:00:00 + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_geogrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_geogrid normal+ 01:40:00 1 1 geogrid.exe SERIAL + JOBID=19424_geogrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=geogrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=63700 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_geogrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_geogrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./geogrid.exe > index_20546.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121122 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ungrib + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ungrib + rm -rf 'GRIBFILE.*' + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables/Vtable.GFS Vtable + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib.exe ./. + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 48 + 2> /dev/null + L_END_DATE=2015061206 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061206 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061206 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061206 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061206 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061206 + cut -c1-4 + echo 2015061206 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061206 + cut -c5-6 + echo 2015061206 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061206 + cut -c7-8 + echo 2015061206 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061206 + cut -c9-10 + echo 2015061206 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_06:00:00\',\'2015-06-12_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + FILES='' + [[ -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts ]] + [[ false == false ]] + CCHH=06 + export CCHH + (( LBC_ITR=0 )) + [[ 0 -le 48 ]] + [[ 0 -lt 1000 ]] + CFTM=0 + export CFTM + [[ 0 -lt 100 ]] + CFTM=00 + export CFTM + [[ 0 -lt 10 ]] + CFTM=000 + export CFTM + [[ 0 -eq 0 ]] + CFTM=000 + export CFTM + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2' + (( LBC_ITR=0+3 )) + [[ 3 -le 48 ]] + [[ 3 -lt 1000 ]] + CFTM=3 + export CFTM + [[ 3 -lt 100 ]] + CFTM=03 + export CFTM + [[ 3 -lt 10 ]] + CFTM=003 + export CFTM + [[ 3 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2' + (( LBC_ITR=3+3 )) + [[ 6 -le 48 ]] + [[ 6 -lt 1000 ]] + CFTM=6 + export CFTM + [[ 6 -lt 100 ]] + CFTM=06 + export CFTM + [[ 6 -lt 10 ]] + CFTM=006 + export CFTM + [[ 6 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2' + (( LBC_ITR=6+3 )) + [[ 9 -le 48 ]] + [[ 9 -lt 1000 ]] + CFTM=9 + export CFTM + [[ 9 -lt 100 ]] + CFTM=09 + export CFTM + [[ 9 -lt 10 ]] + CFTM=009 + export CFTM + [[ 9 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2' + (( LBC_ITR=9+3 )) + [[ 12 -le 48 ]] + [[ 12 -lt 1000 ]] + CFTM=12 + export CFTM + [[ 12 -lt 100 ]] + CFTM=012 + export CFTM + [[ 12 -lt 10 ]] + [[ 12 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2' + (( LBC_ITR=12+3 )) + [[ 15 -le 48 ]] + [[ 15 -lt 1000 ]] + CFTM=15 + export CFTM + [[ 15 -lt 100 ]] + CFTM=015 + export CFTM + [[ 15 -lt 10 ]] + [[ 15 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2' + (( LBC_ITR=15+3 )) + [[ 18 -le 48 ]] + [[ 18 -lt 1000 ]] + CFTM=18 + export CFTM + [[ 18 -lt 100 ]] + CFTM=018 + export CFTM + [[ 18 -lt 10 ]] + [[ 18 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2' + (( LBC_ITR=18+3 )) + [[ 21 -le 48 ]] + [[ 21 -lt 1000 ]] + CFTM=21 + export CFTM + [[ 21 -lt 100 ]] + CFTM=021 + export CFTM + [[ 21 -lt 10 ]] + [[ 21 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2' + (( LBC_ITR=21+3 )) + [[ 24 -le 48 ]] + [[ 24 -lt 1000 ]] + CFTM=24 + export CFTM + [[ 24 -lt 100 ]] + CFTM=024 + export CFTM + [[ 24 -lt 10 ]] + [[ 24 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2' + (( LBC_ITR=24+3 )) + [[ 27 -le 48 ]] + [[ 27 -lt 1000 ]] + CFTM=27 + export CFTM + [[ 27 -lt 100 ]] + CFTM=027 + export CFTM + [[ 27 -lt 10 ]] + [[ 27 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2' + (( LBC_ITR=27+3 )) + [[ 30 -le 48 ]] + [[ 30 -lt 1000 ]] + CFTM=30 + export CFTM + [[ 30 -lt 100 ]] + CFTM=030 + export CFTM + [[ 30 -lt 10 ]] + [[ 30 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2' + (( LBC_ITR=30+3 )) + [[ 33 -le 48 ]] + [[ 33 -lt 1000 ]] + CFTM=33 + export CFTM + [[ 33 -lt 100 ]] + CFTM=033 + export CFTM + [[ 33 -lt 10 ]] + [[ 33 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2' + (( LBC_ITR=33+3 )) + [[ 36 -le 48 ]] + [[ 36 -lt 1000 ]] + CFTM=36 + export CFTM + [[ 36 -lt 100 ]] + CFTM=036 + export CFTM + [[ 36 -lt 10 ]] + [[ 36 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f036.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f036.grib2' + (( LBC_ITR=36+3 )) + [[ 39 -le 48 ]] + [[ 39 -lt 1000 ]] + CFTM=39 + export CFTM + [[ 39 -lt 100 ]] + CFTM=039 + export CFTM + [[ 39 -lt 10 ]] + [[ 39 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f039.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f039.grib2' + (( LBC_ITR=39+3 )) + [[ 42 -le 48 ]] + [[ 42 -lt 1000 ]] + CFTM=42 + export CFTM + [[ 42 -lt 100 ]] + CFTM=042 + export CFTM + [[ 42 -lt 10 ]] + [[ 42 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f042.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f042.grib2' + (( LBC_ITR=42+3 )) + [[ 45 -le 48 ]] + [[ 45 -lt 1000 ]] + CFTM=45 + export CFTM + [[ 45 -lt 100 ]] + CFTM=045 + export CFTM + [[ 45 -lt 10 ]] + [[ 45 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f045.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f045.grib2' + (( LBC_ITR=45+3 )) + [[ 48 -le 48 ]] + [[ 48 -lt 1000 ]] + CFTM=48 + export CFTM + [[ 48 -lt 100 ]] + CFTM=048 + export CFTM + [[ 48 -lt 10 ]] + [[ 48 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f048.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f048.grib2' + (( LBC_ITR=48+3 )) + [[ 51 -le 48 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/link_grib.csh /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061006.f048.grib2 + RANDOM=42773 + JOBRND=19424_ungrib + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_ungrib normal+ 01:40:00 1 1 ungrib.exe SERIAL + JOBID=19424_ungrib + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=ungrib.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=63835 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_ungrib #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_ungrib.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./ungrib.exe > index_18596.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121123 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d01.nc ./. + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d02.nc ./. + ln -fs ../ungrib/FILE:2015-06-10_06 ../ungrib/FILE:2015-06-10_09 ../ungrib/FILE:2015-06-10_12 ../ungrib/FILE:2015-06-10_15 ../ungrib/FILE:2015-06-10_18 ../ungrib/FILE:2015-06-10_21 ../ungrib/FILE:2015-06-11_00 ../ungrib/FILE:2015-06-11_03 ../ungrib/FILE:2015-06-11_06 ../ungrib/FILE:2015-06-11_09 ../ungrib/FILE:2015-06-11_12 ../ungrib/FILE:2015-06-11_15 ../ungrib/FILE:2015-06-11_18 ../ungrib/FILE:2015-06-11_21 ../ungrib/FILE:2015-06-12_00 ../ungrib/FILE:2015-06-12_03 ../ungrib/FILE:2015-06-12_06 ./. + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid/METGRID.TBL.ARW METGRID.TBL + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid.exe . + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 48 + 2> /dev/null + L_END_DATE=2015061206 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061206 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061206 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061206 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061206 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061206 + cut -c1-4 + echo 2015061206 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061206 + cut -c5-6 + echo 2015061206 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061206 + cut -c7-8 + echo 2015061206 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061206 + cut -c9-10 + echo 2015061206 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_06:00:00\',\'2015-06-12_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_metgrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_metgrid normal+ 01:40:00 1 1 metgrid.exe SERIAL + JOBID=19424_metgrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=metgrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=64356 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_metgrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_metgrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./metgrid.exe > index_1483.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121129 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 48 + 2> /dev/null + P_END_DATE=2015061206 + export P_END_DATE + [[ 2015061006 -le 2015061206 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-10_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061206 ]] + cut -c1-4 + echo 2015061009 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061009 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061009 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061009 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-10_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-10_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061206 ]] + cut -c1-4 + echo 2015061012 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061012 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061012 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061012 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-10_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-10_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061206 ]] + cut -c1-4 + echo 2015061015 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061015 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061015 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061015 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-10_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-10_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061206 ]] + cut -c1-4 + echo 2015061018 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061018 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061018 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061018 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-10_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-10_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061206 ]] + cut -c1-4 + echo 2015061021 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061021 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061021 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061021 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-10_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-10_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061206 ]] + cut -c1-4 + echo 2015061100 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061100 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061100 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061100 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-11_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061206 ]] + cut -c1-4 + echo 2015061103 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061103 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061103 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061103 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-11_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061206 ]] + cut -c1-4 + echo 2015061106 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061106 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061106 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061106 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-11_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061206 ]] + cut -c1-4 + echo 2015061109 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061109 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061109 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061109 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-11_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061206 ]] + cut -c1-4 + echo 2015061112 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061112 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061112 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061112 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-11_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061206 ]] + cut -c1-4 + echo 2015061115 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061115 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061115 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061115 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-11_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061115 3 + 2> /dev/null + P_DATE=2015061118 + export P_DATE + [[ 2015061118 -le 2015061206 ]] + cut -c1-4 + echo 2015061118 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061118 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061118 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061118 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-11_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061118 3 + 2> /dev/null + P_DATE=2015061121 + export P_DATE + [[ 2015061121 -le 2015061206 ]] + cut -c1-4 + echo 2015061121 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061121 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061121 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061121 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-11_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-11_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061121 3 + 2> /dev/null + P_DATE=2015061200 + export P_DATE + [[ 2015061200 -le 2015061206 ]] + cut -c1-4 + echo 2015061200 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061200 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061200 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061200 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-12_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-12_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-12_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061200 3 + 2> /dev/null + P_DATE=2015061203 + export P_DATE + [[ 2015061203 -le 2015061206 ]] + cut -c1-4 + echo 2015061203 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061203 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061203 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061203 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-12_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-12_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-12_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061203 3 + 2> /dev/null + P_DATE=2015061206 + export P_DATE + [[ 2015061206 -le 2015061206 ]] + cut -c1-4 + echo 2015061206 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061206 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061206 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061206 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-12_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-12_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d02.2015-06-12_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061206 3 + 2> /dev/null + P_DATE=2015061209 + export P_DATE + [[ 2015061209 -le 2015061206 ]] + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + P_END_DATE=2015061012 + export P_END_DATE + [[ 2015061006 -le 2015061012 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061012 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061012 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061012 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061012 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=64812 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_32072.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121135 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061012 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061009 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 6 + 2> /dev/null + L_END_DATE=2015061015 + export L_END_DATE + cut -c1-4 + echo 2015061009 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061009 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061009 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061009 + L_START_HOUR=09 + export L_START_HOUR + cut -c1-4 + echo 2015061015 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061015 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061015 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061015 + L_END_HOUR=15 + export L_END_HOUR + cut -c1-4 + echo 2015061009 + cut -c1-4 + echo 2015061009 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061009 + cut -c5-6 + echo 2015061009 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061009 + cut -c7-8 + echo 2015061009 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061009 + cut -c9-10 + echo 2015061009 + NL_START_HOUR=09,09 + export NL_START_HOUR + cut -c1-4 + echo 2015061015 + cut -c1-4 + echo 2015061015 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061015 + cut -c5-6 + echo 2015061015 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061015 + cut -c7-8 + echo 2015061015 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061015 + cut -c9-10 + echo 2015061015 + NL_END_HOUR=15,15 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_09:00:00\',\'2015-06-10_09:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_15:00:00\',\'2015-06-10_15:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 15,15, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=64898 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_29909.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121136 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061012 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061012 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + cut -c1-4 + echo 2015061012 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061012 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061012 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061012 + L_START_HOUR=12 + export L_START_HOUR + cut -c1-4 + echo 2015061018 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061018 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061018 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061018 + L_END_HOUR=18 + export L_END_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_START_HOUR=12,12 + export NL_START_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_END_HOUR=18,18 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=64984 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_22099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121137 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061012 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=6 + export L_FCST_RANGE + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061012 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061012 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061012 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061012 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_END_DATE + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + P_END_DATE=2015061012 + export P_END_DATE + [[ 2015061006 -le 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_09:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65096 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17811.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121138 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65124 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9928.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121139 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65151 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15968.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121140 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65180 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11453.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121141 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65209 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29712.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121142 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65237 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23387.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121143 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65265 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10787.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121144 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65293 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21128.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121145 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65320 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15925.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121146 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:00:00', / &wrfvar22 time_window_max = '2015-06-10_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65348 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24866.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121147 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_09:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_06:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_12:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17811.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65570 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28306.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121148 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9928.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65598 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5820.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121149 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15968.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65626 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17022.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121150 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11453.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65654 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1224.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121151 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29712.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65682 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12090.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121152 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23387.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65710 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16568.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121153 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10787.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65737 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21830.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121154 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21128.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65765 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4103.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121155 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15925.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65794 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10677.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121156 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24866.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_06:00:00', / &wrfvar22 time_window_max = '2015-06-10_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65822 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5757.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121157 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_12:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_09:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_15:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28306.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65919 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121158 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5820.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65948 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7504.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121159 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17022.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=65976 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1644.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121160 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1224.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=66004 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21175.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121161 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12090.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=66032 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19024.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121162 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16568.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=66059 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121163 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21830.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=66088 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8806.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121164 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4103.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=66116 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_151.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121165 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10677.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=66144 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28568.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121166 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5757.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -f hhddmmyycc + NL_SEED_ARRAY1=0610061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0610061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=66173 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1516.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121167 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061012 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=66433 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5928.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121168 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=66444 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5866.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121169 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=66655 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8046.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121170 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=66667 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30557.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121171 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=66882 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30916.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121172 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=66894 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10066.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121173 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67105 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6043.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121174 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67117 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5500.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121175 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67453 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8248.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121176 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67465 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11865.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121177 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67679 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18938.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121178 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67692 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15281.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121179 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67902 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31593.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121180 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=67914 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15371.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121181 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=68129 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15074.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121182 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=68141 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3491.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121183 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=68352 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15319.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121184 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=68365 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32365.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121185 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq_AIR_O3_2015061000.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_END_DATE=2015061012 + export L_END_DATE + TRANDOM=42773 + [[ 2015061006 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 + 2> /dev/null + NEXT_L_DATE=2015061009 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=68576 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30855.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121186 + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 + 2> /dev/null + NEXT_L_DATE=2015061012 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_09:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=68588 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16761.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121187 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -lt 2015061012 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + LE_DATE=2015061012 + export LE_DATE + [[ 2015061006 -le 2015061012 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061006 -eq 2015061006 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=68896 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_6721.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121188 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_06:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061012 -eq 2015061006 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=70895 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_25561.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121189 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_12:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061012 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=42773 + JOBRND=19424_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=19424_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=72702 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_2653.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121190 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_06:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_06:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_07:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_07:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_07:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_07:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_08:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_08:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_08:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_08:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_09:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_09:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_09:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_09:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_10:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_10:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_10:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_10:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_11:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_11:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_11:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_11:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_12:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_12:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_12:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_12:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + LE_DATE=2015061012 + export LE_DATE + [[ 2015061006 -le 2015061012 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_07:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_08:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_09:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_10:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_11:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_11:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_12:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/metgrid/met_em.d01.2015-06-12_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=42773 + JOBRND=19424_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 19424_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121191 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_06:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_06:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 ./. + mv wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e000 + mv wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_d01_2015-06-10_06:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73373 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.73373 rm -f tmp.73373 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set files = ( wrfinput_d01_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73451 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.73451 rm -f tmp.73451 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.73451 rm -f tmp.73451 if ( wrfinput_d01_2015-06-10_06:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00.e000 echo wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00.e000 ln -s wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_06:00:00.e000 wrfinput_d01_2015-06-10_06:00:00 + mv wrfbdy_d01_2015-06-10_06:00:00.e000 wrfbdy_d01_2015-06-10_06:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=06 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73540 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.73540 rm -f tmp.73540 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e001 set files = ( wrfinput_d01_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73614 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.73614 rm -f tmp.73614 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.73614 rm -f tmp.73614 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73699 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.73699 rm -f tmp.73699 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e002 set files = ( wrfinput_d01_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73771 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.73771 rm -f tmp.73771 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.73771 rm -f tmp.73771 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73856 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.73856 rm -f tmp.73856 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e003 set files = ( wrfinput_d01_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.73933 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.73933 rm -f tmp.73933 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.73933 rm -f tmp.73933 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74017 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.74017 rm -f tmp.74017 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e004 set files = ( wrfinput_d01_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74091 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.74091 rm -f tmp.74091 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.74091 rm -f tmp.74091 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74176 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.74176 rm -f tmp.74176 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e005 set files = ( wrfinput_d01_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74251 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.74251 rm -f tmp.74251 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.74251 rm -f tmp.74251 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74336 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.74336 rm -f tmp.74336 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e006 set files = ( wrfinput_d01_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74413 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.74413 rm -f tmp.74413 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.74413 rm -f tmp.74413 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74498 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.74498 rm -f tmp.74498 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e007 set files = ( wrfinput_d01_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74696 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.74696 rm -f tmp.74696 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.74696 rm -f tmp.74696 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74782 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.74782 rm -f tmp.74782 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e008 set files = ( wrfinput_d01_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74854 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.74854 rm -f tmp.74854 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.74854 rm -f tmp.74854 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.74939 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.74939 rm -f tmp.74939 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e009 set files = ( wrfinput_d01_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.75016 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.75016 rm -f tmp.75016 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.75016 rm -f tmp.75016 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_06:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_06:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.75100 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.75100 rm -f tmp.75100 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_06:00:00.e010 set files = ( wrfinput_d01_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_06:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_06:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.75173 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.75173 rm -f tmp.75173 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_06:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_06:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.75173 rm -f tmp.75173 if ( wrfinput_d01_2015-06-10_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 echo wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e010 ln -s wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_06:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_06:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_06:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01_2015-06-10_06:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfbdy_d01_2015-06-10_06:00:00 wrfbdy_d01_2015-06-10_06:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01_2015-06-10_06:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_d01_2015-06-10_06:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_d01_2015-06-10_06:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_d01_2015-06-10_06:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_d01_2015-06-10_06:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_d01_2015-06-10_06:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_d01_2015-06-10_06:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_d01_2015-06-10_06:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_d01_2015-06-10_06:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_06:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_06:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_d01_2015-06-10_06:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_met_bc/wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + LE_DATE=2015061012 + export LE_DATE + [[ 2015061006 -le 2015061012 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=75588 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8372.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121192 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + cut -c1-4 + echo 2015061007 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061007 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061007 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061007 + L_HH=07 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e001 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e002 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e003 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e004 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e005 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e006 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e007 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e008 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e009 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_07:00:00 wrfchemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_07:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_07:00:00 wrffirechemi_d01_2015-06-10_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_07:00:00.e010 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_07:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_07:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=75906 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_9015.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121193 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + cut -c1-4 + echo 2015061008 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061008 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061008 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061008 + L_HH=08 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e001 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e002 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e003 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e004 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e005 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e006 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e007 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e008 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e009 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_08:00:00 wrfchemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_08:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_08:00:00 wrffirechemi_d01_2015-06-10_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_08:00:00.e010 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_08:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_08:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=76101 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5116.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121194 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + cut -c1-4 + echo 2015061009 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061009 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061009 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061009 + L_HH=09 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e001 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e002 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e003 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e004 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e005 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e006 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e007 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e008 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e009 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_09:00:00 wrfchemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_09:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_09:00:00 wrffirechemi_d01_2015-06-10_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_09:00:00.e010 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_09:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_09:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=76297 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_20708.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121195 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + cut -c1-4 + echo 2015061010 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061010 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061010 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061010 + L_HH=10 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e001 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e002 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e003 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e004 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e005 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e006 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e007 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e008 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e009 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_10:00:00 wrfchemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_10:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_10:00:00 wrffirechemi_d01_2015-06-10_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_10:00:00.e010 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_10:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_10:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=76497 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121196 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + cut -c1-4 + echo 2015061011 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061011 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061011 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061011 + L_HH=11 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e001 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e002 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e003 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e004 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e005 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e006 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e007 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e008 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e009 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_11:00:00 wrfchemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_11:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_11:00:00 wrffirechemi_d01_2015-06-10_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_11:00:00.e010 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_11:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_11:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=76824 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_28137.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121197 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061006 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=77052 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29247.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121198 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 06 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061006 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=06 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=09 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061006.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061006.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061006 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=06 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=09 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061006.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061006.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/prepbufr_met_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/prepbufr_met_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061006 obs_seq_prep_2015061006.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/prepbufr_met_obs/obs_seq_prep_2015061006.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/prepbufr_met_obs/obs_seq_prep_2015061006.out ./obs_seq_MET_2015061006.out + FILE_LIST[1]=obs_seq_MET_2015061006.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/airnow_o3_obs/obs_seq_airnow_o3_2015061006.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/airnow_o3_obs/obs_seq_airnow_o3_2015061006.out ./obs_seq_AIR_O3_2015061006.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061006.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/tolnet_o3_obs/obs_seq_tolnet_o3_2015061006.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/tolnet_o3_obs/obs_seq_tolnet_o3_2015061006.out ./obs_seq_TOL_O3_2015061006.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061006.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061006.out\',\'obs_seq_AIR_O3_2015061006.out\',\'obs_seq_TOL_O3_2015061006.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=10800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=32400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 4 14 55 47 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=10800 which is Gregorian day: 2015 Jun 10 03:00:00 Excluding observations after: day=151370, sec=32400 which is Gregorian day: 2015 Jun 10 09:00:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061006.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061006.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061006.out inserted number 20000 of 61832 inserted number 40000 of 61832 inserted number 60000 of 61832 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 61832 Number of obs really inserted : 61832 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061006.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 61832 Number of obs to be inserted : 5395 Number of obs really inserted : 5395 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 67227 Actual number of obs in the new seq file : 67227 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=10861 Gregorian day: 2015 Jun 10 03:01:01 Last obs time: day=151370, sec=32400 Gregorian day: 2015 Jun 10 09:00:00 Number of obs processed : 67227 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 389 obs RADIOSONDE_V_WIND_COMPONENT 389 obs RADIOSONDE_TEMPERATURE 311 obs RADIOSONDE_SPECIFIC_HUMIDITY 303 obs AIRCRAFT_U_WIND_COMPONENT 27 obs AIRCRAFT_V_WIND_COMPONENT 27 obs AIRCRAFT_TEMPERATURE 236 obs MARINE_SFC_U_WIND_COMPONENT 3117 obs MARINE_SFC_V_WIND_COMPONENT 3117 obs MARINE_SFC_TEMPERATURE 3446 obs MARINE_SFC_SPECIFIC_HUMIDITY 876 obs LAND_SFC_U_WIND_COMPONENT 564 obs LAND_SFC_V_WIND_COMPONENT 564 obs LAND_SFC_TEMPERATURE 570 obs LAND_SFC_SPECIFIC_HUMIDITY 530 obs SAT_U_WIND_COMPONENT 21555 obs SAT_V_WIND_COMPONENT 21555 obs RADIOSONDE_SURFACE_ALTIMETER 8 obs MARINE_SFC_ALTIMETER 3674 obs LAND_SFC_ALTIMETER 574 obs AIRNOW_O3 5395 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 4 14 55 48 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061006.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/combine_obs/obs_seq_comb_2015061006.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=42773 + JOBRND=19424_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 19424_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 21600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121199 + mv obs_seq.new obs_seq_comb_filtered_2015061006.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061006 -eq 2015061006 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/preprocess_obs/obs_seq_comb_filtered_2015061006.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/preprocess_obs/obs_seq_comb_filtered_2015061006.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_06:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e001 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e002 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e003 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e004 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e005 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e006 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e007 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e008 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e009 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e010 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e001 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80518 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_167.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121200 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e002 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80522 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3077.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121201 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e003 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80526 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_21478.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121202 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e004 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80530 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9258.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121203 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e005 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80534 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_19746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121204 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e006 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80538 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_26444.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121205 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e007 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80543 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_13665.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121206 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e008 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80547 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_2470.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121207 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e009 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80552 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_1505.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121208 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_wrf_e010 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=80556 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_15068.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121209 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061006.out','obs_seq_AIR_O3_2015061006.out','obs_seq_TOL_O3_2015061006.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10800, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + true + [[ 2015061006 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061006 -ne 2015061006 ]] + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 10800 + (( temp[1]=10800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=10801 + export NL_FIRST_OBS_SECONDS + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 32400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=32400 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=42773 + JOBRND=19424_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=19424_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=80969 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 19424_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_9424.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121210 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=83372 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_28801.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121211 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=83588 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_21261.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121212 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=83804 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_31862.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121213 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=84018 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_2627.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121214 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=84231 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_16258.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121215 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=84443 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_29987.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121216 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=84655 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_23345.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121217 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=84872 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_3926.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121218 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=85084 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_31015.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121219 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 6, 0, 0, last_bin_center = 2015, 6, 10, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 10801, last_obs_days = 151370, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfinput_d01 + LL_DATE=2015061006 + export LL_DATE + LL_END_DATE=2015061006 + export LL_END_DATE + echo 2015061006 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061006 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061006 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061006 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-10_06:00:00 + export LL_FILE_DATE + [[ 2015061006 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=85297 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_7431.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121220 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_06:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e001 wrfbdy_d01_2015-06-10_06:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e002 wrfbdy_d01_2015-06-10_06:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e003 wrfbdy_d01_2015-06-10_06:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e004 wrfbdy_d01_2015-06-10_06:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e005 wrfbdy_d01_2015-06-10_06:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e006 wrfbdy_d01_2015-06-10_06:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e007 wrfbdy_d01_2015-06-10_06:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e008 wrfbdy_d01_2015-06-10_06:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e009 wrfbdy_d01_2015-06-10_06:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_06:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_06:00:00.e010 wrfbdy_d01_2015-06-10_06:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_06:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061006 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + TRANDOM=42773 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e001 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e001 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e001 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e001 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e001 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e001 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e001 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e001 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e001 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e001 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e001 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e001 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e001 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e001 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e001 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e001 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e001 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=87558 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27399.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121221 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e002 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e002 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e002 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e002 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e002 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e002 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e002 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e002 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e002 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e002 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e002 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e002 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e002 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e002 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e002 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e002 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e002 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e002 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e002 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e002 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e002 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e002 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e002 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e002 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e002 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e002 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=87727 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_14710.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121222 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e003 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e003 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e003 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e003 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e003 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e003 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e003 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e003 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e003 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e003 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e003 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e003 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e003 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e003 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e003 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e003 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e003 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e003 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e003 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e003 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e003 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e003 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e003 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e003 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e003 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e003 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=87897 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31364.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121223 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e004 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e004 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e004 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e004 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e004 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e004 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e004 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e004 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e004 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e004 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e004 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e004 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e004 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e004 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e004 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e004 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e004 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e004 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e004 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e004 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e004 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e004 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e004 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e004 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e004 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e004 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=88071 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_10970.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121224 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e005 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e005 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e005 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e005 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e005 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e005 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e005 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e005 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e005 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e005 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e005 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e005 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e005 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e005 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e005 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e005 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e005 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e005 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e005 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e005 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e005 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e005 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e005 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e005 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e005 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e005 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=88241 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121225 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e006 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e006 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e006 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e006 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e006 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e006 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e006 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e006 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e006 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e006 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e006 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e006 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e006 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e006 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e006 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e006 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e006 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e006 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e006 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e006 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e006 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e006 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e006 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e006 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e006 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e006 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=88412 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_21533.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121226 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e007 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e007 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e007 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e007 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e007 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e007 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e007 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e007 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e007 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e007 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e007 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e007 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e007 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e007 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e007 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e007 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e007 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e007 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e007 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e007 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e007 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e007 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e007 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e007 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e007 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e007 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=88582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24649.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121227 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e008 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e008 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e008 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e008 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e008 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e008 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e008 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e008 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e008 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e008 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e008 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e008 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e008 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e008 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e008 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e008 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e008 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e008 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e008 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e008 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e008 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e008 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e008 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e008 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e008 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e008 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=88757 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26230.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121228 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e009 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e009 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e009 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e009 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e009 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e009 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e009 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e009 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e009 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e009 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e009 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e009 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e009 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e009 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e009 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e009 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e009 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e009 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e009 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e009 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e009 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e009 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e009 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e009 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e009 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e009 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=88927 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_10347.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121229 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061012 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e010 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01_2015-06-10_06:00:00 + [[ 2015061006 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061012 ]] + echo 2015061007 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061007 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061007 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061007 + cut -c9-10 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-10_07:00:00 + export L_FILE_DATE + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e010 wrffirechemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e010 wrfchemi_d01_2015-06-10_07:00:00 + [[ 2015061007 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_07:00:00.e010 wrfchemi_d01_2015-06-10_07:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_07:00:00.e010 wrffirechemi_d01_2015-06-10_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 +1 + 2> /dev/null + L_DATE=2015061008 + export L_DATE + [[ 2015061008 -le 2015061012 ]] + echo 2015061008 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061008 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061008 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061008 + cut -c9-10 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-10_08:00:00 + export L_FILE_DATE + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e010 wrffirechemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e010 wrfchemi_d01_2015-06-10_08:00:00 + [[ 2015061008 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_08:00:00.e010 wrfchemi_d01_2015-06-10_08:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_08:00:00.e010 wrffirechemi_d01_2015-06-10_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 +1 + 2> /dev/null + L_DATE=2015061009 + export L_DATE + [[ 2015061009 -le 2015061012 ]] + echo 2015061009 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061009 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061009 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061009 + cut -c9-10 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-10_09:00:00 + export L_FILE_DATE + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e010 wrffirechemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e010 wrfchemi_d01_2015-06-10_09:00:00 + [[ 2015061009 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_09:00:00.e010 wrfchemi_d01_2015-06-10_09:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_09:00:00.e010 wrffirechemi_d01_2015-06-10_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 +1 + 2> /dev/null + L_DATE=2015061010 + export L_DATE + [[ 2015061010 -le 2015061012 ]] + echo 2015061010 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061010 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061010 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061010 + cut -c9-10 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-10_10:00:00 + export L_FILE_DATE + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e010 wrffirechemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e010 wrfchemi_d01_2015-06-10_10:00:00 + [[ 2015061010 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_10:00:00.e010 wrfchemi_d01_2015-06-10_10:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_10:00:00.e010 wrffirechemi_d01_2015-06-10_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 +1 + 2> /dev/null + L_DATE=2015061011 + export L_DATE + [[ 2015061011 -le 2015061012 ]] + echo 2015061011 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061011 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061011 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061011 + cut -c9-10 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-10_11:00:00 + export L_FILE_DATE + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e010 wrffirechemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e010 wrfchemi_d01_2015-06-10_11:00:00 + [[ 2015061011 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_11:00:00.e010 wrfchemi_d01_2015-06-10_11:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_11:00:00.e010 wrffirechemi_d01_2015-06-10_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 +1 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061012 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e010 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e010 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e010 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e010 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e010 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/wrfout_d01_2015-06-10_06:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/update_bc/wrfbdy_d01_2015-06-10_06:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=89096 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_1412.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121230 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/ensemble_mean_output + [[ 2015061006 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf 'wrfout_d01_*' + P_DATE=2015061006 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 6 + 2> /dev/null + P_END_DATE=2015061012 + export P_END_DATE + [[ 2015061006 -le 2015061012 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_06:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061006_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061012 ]] + cut -c1-4 + echo 2015061007 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061007 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061007 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061007 + P_HH=07 + export P_HH + P_FILE_DATE=2015-06-10_07:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_07:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061007_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061012 ]] + cut -c1-4 + echo 2015061008 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061008 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061008 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061008 + P_HH=08 + export P_HH + P_FILE_DATE=2015-06-10_08:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_08:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061008_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061008 1 + 2> /dev/null + P_DATE=2015061009 + export P_DATE + [[ 2015061009 -le 2015061012 ]] + cut -c1-4 + echo 2015061009 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061009 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061009 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061009 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-10_09:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_09:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061009_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061009 1 + 2> /dev/null + P_DATE=2015061010 + export P_DATE + [[ 2015061010 -le 2015061012 ]] + cut -c1-4 + echo 2015061010 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061010 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061010 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061010 + P_HH=10 + export P_HH + P_FILE_DATE=2015-06-10_10:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_10:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061010_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061010 1 + 2> /dev/null + P_DATE=2015061011 + export P_DATE + [[ 2015061011 -le 2015061012 ]] + cut -c1-4 + echo 2015061011 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061011 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061011 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061011 + P_HH=11 + export P_HH + P_FILE_DATE=2015-06-10_11:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_11:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061011_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061011 1 + 2> /dev/null + P_DATE=2015061012 + export P_DATE + [[ 2015061012 -le 2015061012 ]] + cut -c1-4 + echo 2015061012 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061012 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061012 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061012 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-10_12:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061012_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + P_DATE=2015061013 + export P_DATE + [[ 2015061013 -le 2015061012 ]] + CYCLE_DATE=2015061012 + export CYCLE_DATE + [[ 2015061012 -le 2015061218 ]] + DATE=2015061012 + export DATE + CYCLE_PERIOD=6 + export CYCLE_PERIOD + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + START_IASI_O3_DATA=2014060100 + export START_IASI_O3_DATA + END_IASI_O3_DATA=2014073118 + export END_IASI_O3_DATA + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cut -c1-4 + echo 2015061012 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061012 + YY=15 + export YY + cut -c5-6 + echo 2015061012 + MM=06 + export MM + cut -c7-8 + echo 2015061012 + DD=10 + export DD + cut -c9-10 + echo 2015061012 + HH=12 + export HH + DATE_SHORT=15061012 + export DATE_SHORT + FILE_DATE=2015-06-10_12:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -6 + 2> /dev/null + PAST_DATE=2015061006 + export PAST_DATE + cut -c1-4 + echo 2015061006 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061006 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061006 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061006 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061006 + PAST_HH=06 + export PAST_HH + PAST_FILE_DATE=2015-06-10_06:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + NEXT_DATE=2015061018 + export NEXT_DATE + cut -c1-4 + echo 2015061018 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061018 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061018 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061018 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061018 + NEXT_HH=18 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_18:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=12 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 12 + 0 )) + [[ 12 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=12 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 12 + 0 )) + D_DATE=2015061012 + export D_DATE + echo 2015061012 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 43200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=43200 + export SEC_GREG + echo 2015061018 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 64800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=64800 + export NEXT_SEC_GREG + ASIM_WINDOW=3 + export ASIM_WINDOW + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -3 + 2> /dev/null + ASIM_MIN_DATE=2015061009 + export ASIM_MIN_DATE + cut -c1-4 + echo 2015061009 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 2015061009 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 2015061009 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 2015061009 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 2015061009 + ASIM_MIN_HH=09 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +3 + 2> /dev/null + ASIM_MAX_DATE=2015061015 + export ASIM_MAX_DATE + cut -c1-4 + echo 2015061015 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 2015061015 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 2015061015 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 2015061015 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 2015061015 + ASIM_MAX_HH=15 + export ASIM_MAX_HH + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 32400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=32400 + export ASIM_MIN_SEC_GREG + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 54000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=54000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_GEOGRID=true + export RUN_GEOGRID + RUN_UNGRIB=true + export RUN_UNGRIB + RUN_METGRID=true + export RUN_METGRID + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061012 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + FCST_PERIOD=6 + export FCST_PERIOD + (( CYCLE_PERIOD_SEC=6*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + MAX_DOMAINS=02 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + FR_DOMAIN=02 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_FR=255 + export NNXP_FR + NNYP_FR=228 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_FR=255+1 )) + (( NNYP_STAG_FR=228+1 )) + (( NNZP_STAG_FR=36+1 )) + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_FR=80 + export ISTR_FR + JSTR_FR=45 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_FR=9000 + export DX_FR + (( LBC_END=48 )) + LBC_FREQ=3 + export LBC_FREQ + (( INTERVAL_SECONDS=3*60*60 )) + LBC_START=0 + export LBC_START + START_DATE=2015061012 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + END_DATE=2015061018 + export END_DATE + cut -c1-4 + echo 2015061012 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061012 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061012 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061012 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061012 + START_HOUR=12 + export START_HOUR + START_FILE_DATE=2015-06-10_12:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061018 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061018 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061018 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061018 + END_HOUR=18 + export END_HOUR + END_FILE_DATE=2015-06-10_18:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + export GEOGRID_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid + export METGRID_DIR + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=6 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=12,12 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=10,10 + export NL_END_DAY + NL_END_HOUR=18,18 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=10800 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60480,60480 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=120 + export NL_TIME_STEP + NNL_TIME_STEP=120 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_09:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_15:00:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 32400 + (( temp[1]=32400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=32401 + export NL_FIRST_OBS_SECONDS + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 54000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=54000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061012 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=21600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=12 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=12 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=64800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -3 + 2> /dev/null + ASIM_DATE_MIN=2015061009 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +3 + 2> /dev/null + ASIM_DATE_MAX=2015061015 + export ASIM_DATE_MAX + cut -c1-4 + echo 2015061009 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 2015061009 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 2015061009 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 2015061009 + ASIM_MN_HH=09 + export ASIM_MN_HH + cut -c1-4 + echo 2015061015 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 2015061015 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 2015061015 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 2015061015 + ASIM_MX_HH=15 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + E_DATE=2015061018 + export E_DATE + cut -c1-4 + echo 2015061018 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061018 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061018 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061018 + E_HH=18 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid.exe ./. + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_START_DATE=2015-06-10_12:00:00 + export NL_START_DATE + NL_END_DATE=2015-06-10_18:00:00 + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_geogrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_geogrid normal+ 01:40:00 1 1 geogrid.exe SERIAL + JOBID=19424_geogrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=geogrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=94105 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_geogrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_geogrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./geogrid.exe > index_26744.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121234 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ungrib + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ungrib + rm -rf 'GRIBFILE.*' + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables/Vtable.GFS Vtable + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib.exe ./. + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061012 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 48 + 2> /dev/null + L_END_DATE=2015061212 + export L_END_DATE + cut -c1-4 + echo 2015061012 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061012 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061012 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061012 + L_START_HOUR=12 + export L_START_HOUR + cut -c1-4 + echo 2015061212 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061212 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061212 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061212 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_START_HOUR=12,12 + export NL_START_HOUR + cut -c1-4 + echo 2015061212 + cut -c1-4 + echo 2015061212 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061212 + cut -c5-6 + echo 2015061212 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061212 + cut -c7-8 + echo 2015061212 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061212 + cut -c9-10 + echo 2015061212 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_12:00:00\',\'2015-06-12_12:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + FILES='' + [[ -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts ]] + [[ false == false ]] + CCHH=12 + export CCHH + (( LBC_ITR=0 )) + [[ 0 -le 48 ]] + [[ 0 -lt 1000 ]] + CFTM=0 + export CFTM + [[ 0 -lt 100 ]] + CFTM=00 + export CFTM + [[ 0 -lt 10 ]] + CFTM=000 + export CFTM + [[ 0 -eq 0 ]] + CFTM=000 + export CFTM + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2' + (( LBC_ITR=0+3 )) + [[ 3 -le 48 ]] + [[ 3 -lt 1000 ]] + CFTM=3 + export CFTM + [[ 3 -lt 100 ]] + CFTM=03 + export CFTM + [[ 3 -lt 10 ]] + CFTM=003 + export CFTM + [[ 3 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2' + (( LBC_ITR=3+3 )) + [[ 6 -le 48 ]] + [[ 6 -lt 1000 ]] + CFTM=6 + export CFTM + [[ 6 -lt 100 ]] + CFTM=06 + export CFTM + [[ 6 -lt 10 ]] + CFTM=006 + export CFTM + [[ 6 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2' + (( LBC_ITR=6+3 )) + [[ 9 -le 48 ]] + [[ 9 -lt 1000 ]] + CFTM=9 + export CFTM + [[ 9 -lt 100 ]] + CFTM=09 + export CFTM + [[ 9 -lt 10 ]] + CFTM=009 + export CFTM + [[ 9 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2' + (( LBC_ITR=9+3 )) + [[ 12 -le 48 ]] + [[ 12 -lt 1000 ]] + CFTM=12 + export CFTM + [[ 12 -lt 100 ]] + CFTM=012 + export CFTM + [[ 12 -lt 10 ]] + [[ 12 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2' + (( LBC_ITR=12+3 )) + [[ 15 -le 48 ]] + [[ 15 -lt 1000 ]] + CFTM=15 + export CFTM + [[ 15 -lt 100 ]] + CFTM=015 + export CFTM + [[ 15 -lt 10 ]] + [[ 15 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2' + (( LBC_ITR=15+3 )) + [[ 18 -le 48 ]] + [[ 18 -lt 1000 ]] + CFTM=18 + export CFTM + [[ 18 -lt 100 ]] + CFTM=018 + export CFTM + [[ 18 -lt 10 ]] + [[ 18 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2' + (( LBC_ITR=18+3 )) + [[ 21 -le 48 ]] + [[ 21 -lt 1000 ]] + CFTM=21 + export CFTM + [[ 21 -lt 100 ]] + CFTM=021 + export CFTM + [[ 21 -lt 10 ]] + [[ 21 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2' + (( LBC_ITR=21+3 )) + [[ 24 -le 48 ]] + [[ 24 -lt 1000 ]] + CFTM=24 + export CFTM + [[ 24 -lt 100 ]] + CFTM=024 + export CFTM + [[ 24 -lt 10 ]] + [[ 24 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2' + (( LBC_ITR=24+3 )) + [[ 27 -le 48 ]] + [[ 27 -lt 1000 ]] + CFTM=27 + export CFTM + [[ 27 -lt 100 ]] + CFTM=027 + export CFTM + [[ 27 -lt 10 ]] + [[ 27 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2' + (( LBC_ITR=27+3 )) + [[ 30 -le 48 ]] + [[ 30 -lt 1000 ]] + CFTM=30 + export CFTM + [[ 30 -lt 100 ]] + CFTM=030 + export CFTM + [[ 30 -lt 10 ]] + [[ 30 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2' + (( LBC_ITR=30+3 )) + [[ 33 -le 48 ]] + [[ 33 -lt 1000 ]] + CFTM=33 + export CFTM + [[ 33 -lt 100 ]] + CFTM=033 + export CFTM + [[ 33 -lt 10 ]] + [[ 33 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2' + (( LBC_ITR=33+3 )) + [[ 36 -le 48 ]] + [[ 36 -lt 1000 ]] + CFTM=36 + export CFTM + [[ 36 -lt 100 ]] + CFTM=036 + export CFTM + [[ 36 -lt 10 ]] + [[ 36 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f036.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f036.grib2' + (( LBC_ITR=36+3 )) + [[ 39 -le 48 ]] + [[ 39 -lt 1000 ]] + CFTM=39 + export CFTM + [[ 39 -lt 100 ]] + CFTM=039 + export CFTM + [[ 39 -lt 10 ]] + [[ 39 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f039.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f039.grib2' + (( LBC_ITR=39+3 )) + [[ 42 -le 48 ]] + [[ 42 -lt 1000 ]] + CFTM=42 + export CFTM + [[ 42 -lt 100 ]] + CFTM=042 + export CFTM + [[ 42 -lt 10 ]] + [[ 42 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f042.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f042.grib2' + (( LBC_ITR=42+3 )) + [[ 45 -le 48 ]] + [[ 45 -lt 1000 ]] + CFTM=45 + export CFTM + [[ 45 -lt 100 ]] + CFTM=045 + export CFTM + [[ 45 -lt 10 ]] + [[ 45 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f045.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f045.grib2' + (( LBC_ITR=45+3 )) + [[ 48 -le 48 ]] + [[ 48 -lt 1000 ]] + CFTM=48 + export CFTM + [[ 48 -lt 100 ]] + CFTM=048 + export CFTM + [[ 48 -lt 10 ]] + [[ 48 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f048.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f048.grib2' + (( LBC_ITR=48+3 )) + [[ 51 -le 48 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/link_grib.csh /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061012.f048.grib2 + RANDOM=42773 + JOBRND=19424_ungrib + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_ungrib normal+ 01:40:00 1 1 ungrib.exe SERIAL + JOBID=19424_ungrib + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=ungrib.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=94363 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_ungrib #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_ungrib.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./ungrib.exe > index_1704.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121236 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d01.nc ./. + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d02.nc ./. + ln -fs ../ungrib/FILE:2015-06-10_12 ../ungrib/FILE:2015-06-10_15 ../ungrib/FILE:2015-06-10_18 ../ungrib/FILE:2015-06-10_21 ../ungrib/FILE:2015-06-11_00 ../ungrib/FILE:2015-06-11_03 ../ungrib/FILE:2015-06-11_06 ../ungrib/FILE:2015-06-11_09 ../ungrib/FILE:2015-06-11_12 ../ungrib/FILE:2015-06-11_15 ../ungrib/FILE:2015-06-11_18 ../ungrib/FILE:2015-06-11_21 ../ungrib/FILE:2015-06-12_00 ../ungrib/FILE:2015-06-12_03 ../ungrib/FILE:2015-06-12_06 ../ungrib/FILE:2015-06-12_09 ../ungrib/FILE:2015-06-12_12 ./. + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid/METGRID.TBL.ARW METGRID.TBL + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid.exe . + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061012 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 48 + 2> /dev/null + L_END_DATE=2015061212 + export L_END_DATE + cut -c1-4 + echo 2015061012 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061012 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061012 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061012 + L_START_HOUR=12 + export L_START_HOUR + cut -c1-4 + echo 2015061212 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061212 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061212 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061212 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_START_HOUR=12,12 + export NL_START_HOUR + cut -c1-4 + echo 2015061212 + cut -c1-4 + echo 2015061212 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061212 + cut -c5-6 + echo 2015061212 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061212 + cut -c7-8 + echo 2015061212 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061212 + cut -c9-10 + echo 2015061212 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_12:00:00\',\'2015-06-12_12:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_metgrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_metgrid normal+ 01:40:00 1 1 metgrid.exe SERIAL + JOBID=19424_metgrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=metgrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=95967 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_metgrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_metgrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./metgrid.exe > index_25987.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121248 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061012 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 48 + 2> /dev/null + P_END_DATE=2015061212 + export P_END_DATE + [[ 2015061012 -le 2015061212 ]] + cut -c1-4 + echo 2015061012 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061012 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061012 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061012 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-10_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-10_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061212 ]] + cut -c1-4 + echo 2015061015 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061015 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061015 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061015 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-10_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-10_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061212 ]] + cut -c1-4 + echo 2015061018 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061018 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061018 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061018 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-10_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-10_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061212 ]] + cut -c1-4 + echo 2015061021 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061021 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061021 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061021 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-10_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-10_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061212 ]] + cut -c1-4 + echo 2015061100 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061100 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061100 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061100 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-11_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061212 ]] + cut -c1-4 + echo 2015061103 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061103 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061103 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061103 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-11_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061212 ]] + cut -c1-4 + echo 2015061106 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061106 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061106 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061106 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-11_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061212 ]] + cut -c1-4 + echo 2015061109 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061109 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061109 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061109 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-11_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061212 ]] + cut -c1-4 + echo 2015061112 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061112 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061112 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061112 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-11_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061212 ]] + cut -c1-4 + echo 2015061115 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061115 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061115 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061115 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-11_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061115 3 + 2> /dev/null + P_DATE=2015061118 + export P_DATE + [[ 2015061118 -le 2015061212 ]] + cut -c1-4 + echo 2015061118 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061118 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061118 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061118 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-11_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061118 3 + 2> /dev/null + P_DATE=2015061121 + export P_DATE + [[ 2015061121 -le 2015061212 ]] + cut -c1-4 + echo 2015061121 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061121 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061121 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061121 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-11_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-11_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061121 3 + 2> /dev/null + P_DATE=2015061200 + export P_DATE + [[ 2015061200 -le 2015061212 ]] + cut -c1-4 + echo 2015061200 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061200 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061200 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061200 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-12_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-12_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061200 3 + 2> /dev/null + P_DATE=2015061203 + export P_DATE + [[ 2015061203 -le 2015061212 ]] + cut -c1-4 + echo 2015061203 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061203 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061203 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061203 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-12_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-12_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061203 3 + 2> /dev/null + P_DATE=2015061206 + export P_DATE + [[ 2015061206 -le 2015061212 ]] + cut -c1-4 + echo 2015061206 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061206 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061206 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061206 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-12_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-12_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061206 3 + 2> /dev/null + P_DATE=2015061209 + export P_DATE + [[ 2015061209 -le 2015061212 ]] + cut -c1-4 + echo 2015061209 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061209 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061209 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061209 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-12_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-12_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061209 3 + 2> /dev/null + P_DATE=2015061212 + export P_DATE + [[ 2015061212 -le 2015061212 ]] + cut -c1-4 + echo 2015061212 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061212 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061212 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061212 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-12_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d02.2015-06-12_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061212 3 + 2> /dev/null + P_DATE=2015061215 + export P_DATE + [[ 2015061215 -le 2015061212 ]] + P_DATE=2015061012 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + P_END_DATE=2015061018 + export P_END_DATE + [[ 2015061012 -le 2015061018 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061012 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + cut -c1-4 + echo 2015061012 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061012 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061012 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061012 + L_START_HOUR=12 + export L_START_HOUR + cut -c1-4 + echo 2015061018 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061018 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061018 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061018 + L_END_HOUR=18 + export L_END_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_START_HOUR=12,12 + export NL_START_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_END_HOUR=18,18 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96431 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_7592.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121249 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061018 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061015 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 6 + 2> /dev/null + L_END_DATE=2015061021 + export L_END_DATE + cut -c1-4 + echo 2015061015 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061015 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061015 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061015 + L_START_HOUR=15 + export L_START_HOUR + cut -c1-4 + echo 2015061021 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061021 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061021 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061021 + L_END_HOUR=21 + export L_END_HOUR + cut -c1-4 + echo 2015061015 + cut -c1-4 + echo 2015061015 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061015 + cut -c5-6 + echo 2015061015 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061015 + cut -c7-8 + echo 2015061015 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061015 + cut -c9-10 + echo 2015061015 + NL_START_HOUR=15,15 + export NL_START_HOUR + cut -c1-4 + echo 2015061021 + cut -c1-4 + echo 2015061021 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061021 + cut -c5-6 + echo 2015061021 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061021 + cut -c7-8 + echo 2015061021 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061021 + cut -c9-10 + echo 2015061021 + NL_END_HOUR=21,21 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_15:00:00\',\'2015-06-10_15:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_21:00:00\',\'2015-06-10_21:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 15,15, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 21,21, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96516 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_6907.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121250 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061018 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061018 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + cut -c1-4 + echo 2015061018 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061018 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061018 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061018 + L_START_HOUR=18 + export L_START_HOUR + cut -c1-4 + echo 2015061100 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061100 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061100 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061100 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_START_HOUR=18,18 + export NL_START_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96601 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_31987.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121251 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061018 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=6 + export L_FCST_RANGE + L_START_DATE=2015061012 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + cut -c1-4 + echo 2015061012 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061012 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061012 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061012 + L_START_HOUR=12 + export L_START_HOUR + cut -c1-4 + echo 2015061018 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061018 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061018 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061018 + L_END_HOUR=18 + export L_END_HOUR + cut -c1-4 + echo 2015061012 + cut -c1-4 + echo 2015061012 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061012 + cut -c5-6 + echo 2015061012 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061012 + cut -c7-8 + echo 2015061012 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061012 + cut -c9-10 + echo 2015061012 + NL_START_HOUR=12,12 + export NL_START_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_END_DAY=10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_END_HOUR=18,18 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_12:00:00\',\'2015-06-10_12:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_END_DATE + P_DATE=2015061012 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + P_END_DATE=2015061018 + export P_END_DATE + [[ 2015061012 -le 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_12:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_09:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_15:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96713 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12555.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121252 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96740 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17629.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121253 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96769 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26259.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121254 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96797 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22562.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121255 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96824 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9471.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121256 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96852 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18085.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121257 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96880 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_891.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121258 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96907 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11744.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121259 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96935 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8114.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121260 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_09:00:00', / &wrfvar22 time_window_max = '2015-06-10_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=96963 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4695.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121261 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_12:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_15:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_12:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_18:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12555.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97187 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10994.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121262 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17629.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97216 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32734.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121263 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26259.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97244 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25594.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121264 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22562.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97276 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29414.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121265 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9471.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97304 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9720.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121266 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18085.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97331 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25546.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121267 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_891.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97360 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24677.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121268 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11744.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97388 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5208.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121269 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8114.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97416 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121270 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4695.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_15:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_15:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_12:00:00', / &wrfvar22 time_window_max = '2015-06-10_18:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_15:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97444 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20075.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121271 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_15:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_18:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_15:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_21:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10994.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97542 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24430.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121272 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32734.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97571 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32614.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121273 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25594.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97599 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13260.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121274 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29414.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97627 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8095.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121275 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9720.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97655 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8397.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121276 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25546.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97683 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25667.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121277 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24677.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97711 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6246.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121278 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5208.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97739 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8756.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121279 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28099.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97767 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18965.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121280 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20075.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -f hhddmmyycc + NL_SEED_ARRAY1=1210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=97795 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10255.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121281 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061018 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98064 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121282 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98075 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8162.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121283 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98412 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6159.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121284 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98424 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13065.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121285 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98635 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28788.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121286 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98647 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121287 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98858 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28112.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121288 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=98870 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19525.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121289 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99087 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19659.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121290 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99100 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30402.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121291 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99312 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23313.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121292 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99324 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18327.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121293 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99535 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22145.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121294 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99547 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121295 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99758 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11746.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121296 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99770 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31251.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121297 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99981 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23705.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121298 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=99993 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25665.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121299 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_END_DATE=2015061018 + export L_END_DATE + TRANDOM=42773 + [[ 2015061012 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 + 2> /dev/null + NEXT_L_DATE=2015061015 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_15:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=100208 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9751.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121300 + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_15:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 + 2> /dev/null + NEXT_L_DATE=2015061018 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_18:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_15:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=100220 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4007.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121301 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -lt 2015061018 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_12:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_12:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + LE_DATE=2015061018 + export LE_DATE + [[ 2015061012 -le 2015061018 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061012 -eq 2015061012 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=100523 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_21778.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121302 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_12:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061018 -eq 2015061012 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=102561 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_10774.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121313 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_18:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061018 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=42773 + JOBRND=19424_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=19424_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=104318 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_2855.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121314 + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_12:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_12:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_12:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_12:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_13:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_13:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_13:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_13:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_14:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_14:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_14:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_14:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_15:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_15:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_15:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_15:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_16:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_16:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_16:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_16:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_17:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_17:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_17:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_17:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_18:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_18:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_18:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_18:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + LE_DATE=2015061018 + export LE_DATE + [[ 2015061012 -le 2015061018 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_12:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_13:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_13:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_14:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_14:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_15:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_15:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_16:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_16:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_17:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_17:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_18:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/metgrid/met_em.d01.2015-06-12_12:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=42773 + JOBRND=19424_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 19424_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121317 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_12:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_12:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 ./. + mv wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e000 + mv wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_d01_2015-06-10_12:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.106509 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.106509 rm -f tmp.106509 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e000 set files = ( wrfinput_d01_2015-06-10_12:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.106582 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.106582 rm -f tmp.106582 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.106582 rm -f tmp.106582 if ( wrfinput_d01_2015-06-10_12:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00.e000 echo wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01_2015-06-10_12:00:00.e000 ln -s wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_12:00:00.e000 wrfinput_d01_2015-06-10_12:00:00 + mv wrfbdy_d01_2015-06-10_12:00:00.e000 wrfbdy_d01_2015-06-10_12:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=12 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.106671 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.106671 rm -f tmp.106671 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e001 set files = ( wrfinput_d01_2015-06-10_12:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.106749 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.106749 rm -f tmp.106749 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.106749 rm -f tmp.106749 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.106834 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.106834 rm -f tmp.106834 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e002 set files = ( wrfinput_d01_2015-06-10_12:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.106907 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.106907 rm -f tmp.106907 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.106907 rm -f tmp.106907 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.106995 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.106995 rm -f tmp.106995 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e003 set files = ( wrfinput_d01_2015-06-10_12:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107069 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.107069 rm -f tmp.107069 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.107069 rm -f tmp.107069 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107153 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.107153 rm -f tmp.107153 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e004 set files = ( wrfinput_d01_2015-06-10_12:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107230 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.107230 rm -f tmp.107230 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.107230 rm -f tmp.107230 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107316 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.107316 rm -f tmp.107316 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e005 set files = ( wrfinput_d01_2015-06-10_12:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107390 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.107390 rm -f tmp.107390 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.107390 rm -f tmp.107390 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107475 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.107475 rm -f tmp.107475 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e006 set files = ( wrfinput_d01_2015-06-10_12:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107548 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.107548 rm -f tmp.107548 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.107548 rm -f tmp.107548 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107632 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.107632 rm -f tmp.107632 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e007 set files = ( wrfinput_d01_2015-06-10_12:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107709 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.107709 rm -f tmp.107709 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.107709 rm -f tmp.107709 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107883 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.107883 rm -f tmp.107883 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e008 set files = ( wrfinput_d01_2015-06-10_12:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.107992 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.107992 rm -f tmp.107992 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.107992 rm -f tmp.107992 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.108077 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.108077 rm -f tmp.108077 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e009 set files = ( wrfinput_d01_2015-06-10_12:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.108150 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.108150 rm -f tmp.108150 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.108150 rm -f tmp.108150 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_12:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_12:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.108238 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.108238 rm -f tmp.108238 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_12:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_12:00:00.e010 set files = ( wrfinput_d01_2015-06-10_12:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_12:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_12:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_12:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.108313 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.108313 rm -f tmp.108313 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_12:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_12:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_12:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.108313 rm -f tmp.108313 if ( wrfinput_d01_2015-06-10_12:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 echo wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e010 ln -s wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_12:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_12:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_12:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_12:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_12:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01_2015-06-10_12:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfbdy_d01_2015-06-10_12:00:00 wrfbdy_d01_2015-06-10_12:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01_2015-06-10_12:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e001 wrfbdy_d01_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e002 wrfinput_d01_2015-06-10_12:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e002 wrfbdy_d01_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e003 wrfinput_d01_2015-06-10_12:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e003 wrfbdy_d01_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e004 wrfinput_d01_2015-06-10_12:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e004 wrfbdy_d01_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e005 wrfinput_d01_2015-06-10_12:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e005 wrfbdy_d01_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e006 wrfinput_d01_2015-06-10_12:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e006 wrfbdy_d01_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e007 wrfinput_d01_2015-06-10_12:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e007 wrfbdy_d01_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e008 wrfinput_d01_2015-06-10_12:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e008 wrfbdy_d01_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e009 wrfinput_d01_2015-06-10_12:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e009 wrfbdy_d01_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_12:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_12:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_ic/wrfinput_d01_2015-06-10_12:00:00.e010 wrfinput_d01_2015-06-10_12:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_met_bc/wrfbdy_d01_2015-06-10_12:00:00.e010 wrfbdy_d01_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061012 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + LE_DATE=2015061018 + export LE_DATE + [[ 2015061012 -le 2015061018 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e001 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e002 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e003 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e004 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e005 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e006 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e007 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e008 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e009 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_12:00:00 wrfchemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_12:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_12:00:00 wrffirechemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_12:00:00.e010 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-10_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_12:00:00 wrfbiochemi_d01_2015-06-10_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_12:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_12:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=108728 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_4752.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121322 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + cut -c1-4 + echo 2015061013 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061013 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061013 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061013 + L_HH=13 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_13:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_13:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_13:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e001 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e002 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e003 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e004 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e005 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e006 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e007 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e008 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e009 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_13:00:00 wrfchemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_13:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_13:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_13:00:00 wrffirechemi_d01_2015-06-10_13:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_13:00:00.e010 + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_13:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_13:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_13:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=109050 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_19741.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121323 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + cut -c1-4 + echo 2015061014 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061014 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061014 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061014 + L_HH=14 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_14:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_14:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_14:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e001 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e002 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e003 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e004 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e005 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e006 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e007 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e008 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e009 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_14:00:00 wrfchemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_14:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_14:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_14:00:00 wrffirechemi_d01_2015-06-10_14:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_14:00:00.e010 + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_14:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_14:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_14:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=109247 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25014.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121324 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + cut -c1-4 + echo 2015061015 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061015 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061015 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061015 + L_HH=15 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_15:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_15:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_15:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e001 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e002 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e003 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e004 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e005 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e006 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e007 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e008 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e009 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_15:00:00 wrfchemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_15:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_15:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_15:00:00 wrffirechemi_d01_2015-06-10_15:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_15:00:00.e010 + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_15:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_15:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_15:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=109446 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_9935.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121326 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + cut -c1-4 + echo 2015061016 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061016 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061016 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061016 + L_HH=16 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_16:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_16:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_16:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e001 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e002 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e003 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e004 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e005 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e006 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e007 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e008 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e009 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_16:00:00 wrfchemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_16:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_16:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_16:00:00 wrffirechemi_d01_2015-06-10_16:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_16:00:00.e010 + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_16:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_16:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_16:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=109643 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_26692.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121327 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + cut -c1-4 + echo 2015061017 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061017 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061017 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061017 + L_HH=17 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_17:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_17:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_17:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e001 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e002 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e003 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e004 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e005 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e006 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e007 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e008 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e009 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_17:00:00 wrfchemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_17:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_17:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_17:00:00 wrffirechemi_d01_2015-06-10_17:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_17:00:00.e010 + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_17:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_17:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_17:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=109969 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_2240.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121328 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061012 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_12:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=110197 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_16887.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121329 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 12 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=12 + export L_HH + D_DATE=2015061012 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=12 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=12 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=09 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=15 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061012.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061012.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=12 + export L_HH + D_DATE=2015061012 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=12 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=12 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=09 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=15 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061012.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061012.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/prepbufr_met_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/prepbufr_met_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061012 obs_seq_prep_2015061012.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/prepbufr_met_obs/obs_seq_prep_2015061012.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/prepbufr_met_obs/obs_seq_prep_2015061012.out ./obs_seq_MET_2015061012.out + FILE_LIST[1]=obs_seq_MET_2015061012.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/airnow_o3_obs/obs_seq_airnow_o3_2015061012.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/airnow_o3_obs/obs_seq_airnow_o3_2015061012.out ./obs_seq_AIR_O3_2015061012.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061012.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/tolnet_o3_obs/obs_seq_tolnet_o3_2015061012.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/tolnet_o3_obs/obs_seq_tolnet_o3_2015061012.out ./obs_seq_TOL_O3_2015061012.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061012.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061012.out\',\'obs_seq_AIR_O3_2015061012.out\',\'obs_seq_TOL_O3_2015061012.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=32400 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=54000 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 4 17 23 53 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=32400 which is Gregorian day: 2015 Jun 10 09:00:00 Excluding observations after: day=151370, sec=54000 which is Gregorian day: 2015 Jun 10 15:00:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061012.out inserted number 20000 of 92176 inserted number 40000 of 92176 inserted number 60000 of 92176 inserted number 80000 of 92176 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 92176 Number of obs really inserted : 92176 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061012.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 92176 Number of obs to be inserted : 5622 Number of obs really inserted : 5622 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061012.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 97798 Number of obs to be inserted : 1452 Number of obs really inserted : 1452 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 99250 Actual number of obs in the new seq file : 99250 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=32518 Gregorian day: 2015 Jun 10 09:01:58 Last obs time: day=151370, sec=54000 Gregorian day: 2015 Jun 10 15:00:00 Number of obs processed : 99250 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 6627 obs RADIOSONDE_V_WIND_COMPONENT 6627 obs RADIOSONDE_TEMPERATURE 7672 obs RADIOSONDE_SPECIFIC_HUMIDITY 7453 obs AIRCRAFT_U_WIND_COMPONENT 14 obs AIRCRAFT_V_WIND_COMPONENT 14 obs AIRCRAFT_TEMPERATURE 53 obs MARINE_SFC_U_WIND_COMPONENT 3191 obs MARINE_SFC_V_WIND_COMPONENT 3191 obs MARINE_SFC_TEMPERATURE 3487 obs MARINE_SFC_SPECIFIC_HUMIDITY 889 obs LAND_SFC_U_WIND_COMPONENT 626 obs LAND_SFC_V_WIND_COMPONENT 626 obs LAND_SFC_TEMPERATURE 635 obs LAND_SFC_SPECIFIC_HUMIDITY 608 obs SAT_U_WIND_COMPONENT 23010 obs SAT_V_WIND_COMPONENT 23010 obs RADIOSONDE_SURFACE_ALTIMETER 94 obs MARINE_SFC_ALTIMETER 3709 obs LAND_SFC_ALTIMETER 640 obs AIRNOW_O3 5622 obs TOLNET_O3 1452 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 4 17 23 55 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061012.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/combine_obs/obs_seq_comb_2015061012.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=42773 + JOBRND=19424_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 19424_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 43200 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121334 + mv obs_seq.new obs_seq_comb_filtered_2015061012.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061012 -eq 2015061006 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/preprocess_obs/obs_seq_comb_filtered_2015061012.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/preprocess_obs/obs_seq_comb_filtered_2015061012.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_12:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e001 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e002 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e003 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e004 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e005 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e006 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e007 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e008 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e009 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e010 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e001 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113695 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_15675.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121335 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e002 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113699 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_14171.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121336 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e003 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113703 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_23612.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121337 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e004 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113708 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_7021.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121338 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e005 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113712 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_24982.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121339 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e006 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113716 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_28514.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121340 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e007 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113720 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9973.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121341 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e008 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113724 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_12291.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121342 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e009 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113728 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_28193.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121343 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_wrf_e010 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=113732 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_28761.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121344 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061012.out','obs_seq_AIR_O3_2015061012.out','obs_seq_TOL_O3_2015061012.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32400, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + true + [[ 2015061012 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061012 -ne 2015061006 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 2015061009 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 32400 + (( temp[1]=32400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=32401 + export NL_FIRST_OBS_SECONDS + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 54000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=54000 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=42773 + JOBRND=19424_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=19424_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=114148 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 19424_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_30162.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121345 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=116063 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_18230.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121346 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=116282 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_967.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121347 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=116494 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_32119.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121348 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=116707 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_15984.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121349 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=116922 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_11442.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121350 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=117134 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_15252.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121351 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=117348 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_13867.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121352 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=117564 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_29181.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121353 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=117776 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19296.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121354 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 12, 0, 0, last_bin_center = 2015, 6, 10, 12, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 32401, last_obs_days = 151370, last_obs_seconds = 54000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 64800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061006/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_12:00:00 wrfinput_d01 + LL_DATE=2015061012 + export LL_DATE + LL_END_DATE=2015061012 + export LL_END_DATE + echo 2015061012 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061012 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061012 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061012 + cut -c9-10 + LL_HH=12 + export LL_HH + LL_FILE_DATE=2015-06-10_12:00:00 + export LL_FILE_DATE + [[ 2015061012 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=117989 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_666.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121355 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_12:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e001 wrfbdy_d01_2015-06-10_12:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e002 wrfbdy_d01_2015-06-10_12:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e003 wrfbdy_d01_2015-06-10_12:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e004 wrfbdy_d01_2015-06-10_12:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e005 wrfbdy_d01_2015-06-10_12:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e006 wrfbdy_d01_2015-06-10_12:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e007 wrfbdy_d01_2015-06-10_12:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e008 wrfbdy_d01_2015-06-10_12:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e009 wrfbdy_d01_2015-06-10_12:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_12:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_12:00:00.e010 wrfbdy_d01_2015-06-10_12:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_12:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061012 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/real/wrfinput_d02_2015-06-10_12:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + TRANDOM=42773 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e001 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e001 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e001 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e001 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e001 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e001 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e001 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e001 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e001 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e001 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e001 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e001 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e001 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e001 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e001 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e001 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e001 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e001 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e001 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e001 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e001 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e001 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e001 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e001 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e001 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e001 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=120047 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_2263.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121356 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e002 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e002 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e002 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e002 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e002 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e002 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e002 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e002 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e002 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e002 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e002 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e002 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e002 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e002 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e002 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e002 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e002 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e002 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e002 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e002 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e002 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e002 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e002 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e002 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e002 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e002 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e002 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e002 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=120216 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20894.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121357 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e003 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e003 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e003 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e003 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e003 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e003 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e003 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e003 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e003 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e003 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e003 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e003 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e003 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e003 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e003 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e003 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e003 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e003 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e003 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e003 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e003 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e003 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e003 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e003 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e003 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e003 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e003 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e003 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=120386 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_17493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121358 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e004 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e004 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e004 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e004 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e004 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e004 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e004 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e004 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e004 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e004 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e004 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e004 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e004 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e004 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e004 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e004 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e004 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e004 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e004 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e004 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e004 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e004 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e004 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e004 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e004 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e004 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e004 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e004 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=120557 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_23951.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121359 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e005 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e005 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e005 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e005 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e005 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e005 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e005 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e005 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e005 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e005 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e005 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e005 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e005 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e005 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e005 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e005 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e005 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e005 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e005 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e005 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e005 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e005 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e005 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e005 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e005 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e005 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e005 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e005 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=120730 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_12389.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121360 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e006 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e006 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e006 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e006 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e006 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e006 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e006 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e006 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e006 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e006 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e006 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e006 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e006 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e006 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e006 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e006 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e006 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e006 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e006 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e006 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e006 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e006 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e006 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e006 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e006 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e006 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e006 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e006 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=120900 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27095.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121361 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e007 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e007 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e007 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e007 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e007 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e007 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e007 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e007 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e007 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e007 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e007 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e007 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e007 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e007 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e007 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e007 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e007 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e007 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e007 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e007 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e007 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e007 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e007 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e007 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e007 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e007 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e007 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e007 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=121069 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31136.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121362 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e008 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e008 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e008 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e008 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e008 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e008 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e008 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e008 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e008 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e008 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e008 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e008 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e008 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e008 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e008 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e008 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e008 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e008 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e008 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e008 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e008 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e008 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e008 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e008 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e008 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e008 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e008 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e008 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=121242 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30111.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121363 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e009 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e009 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e009 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e009 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e009 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e009 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e009 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e009 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e009 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e009 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e009 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e009 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e009 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e009 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e009 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e009 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e009 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e009 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e009 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e009 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e009 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e009 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e009 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e009 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e009 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e009 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e009 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e009 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=121411 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31522.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121364 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061018 ]] + echo 2015061012 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061012 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061012 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061012 + cut -c9-10 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-10_12:00:00 + export L_FILE_DATE + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_12:00:00.e010 wrfbiochemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_12:00:00.e010 wrffirechemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_12:00:00.e010 wrfchemi_d01_2015-06-10_12:00:00 + [[ 2015061012 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_12:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +1 + 2> /dev/null + L_DATE=2015061013 + export L_DATE + [[ 2015061013 -le 2015061018 ]] + echo 2015061013 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061013 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061013 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061013 + cut -c9-10 + L_HH=13 + export L_HH + L_FILE_DATE=2015-06-10_13:00:00 + export L_FILE_DATE + [[ 13 -eq 00 ]] + [[ 13 -eq 06 ]] + [[ 13 -eq 12 ]] + [[ 13 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e010 wrffirechemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e010 wrfchemi_d01_2015-06-10_13:00:00 + [[ 2015061013 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_13:00:00.e010 wrfchemi_d01_2015-06-10_13:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_13:00:00.e010 wrffirechemi_d01_2015-06-10_13:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 +1 + 2> /dev/null + L_DATE=2015061014 + export L_DATE + [[ 2015061014 -le 2015061018 ]] + echo 2015061014 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061014 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061014 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061014 + cut -c9-10 + L_HH=14 + export L_HH + L_FILE_DATE=2015-06-10_14:00:00 + export L_FILE_DATE + [[ 14 -eq 00 ]] + [[ 14 -eq 06 ]] + [[ 14 -eq 12 ]] + [[ 14 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e010 wrffirechemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e010 wrfchemi_d01_2015-06-10_14:00:00 + [[ 2015061014 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_14:00:00.e010 wrfchemi_d01_2015-06-10_14:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_14:00:00.e010 wrffirechemi_d01_2015-06-10_14:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 +1 + 2> /dev/null + L_DATE=2015061015 + export L_DATE + [[ 2015061015 -le 2015061018 ]] + echo 2015061015 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061015 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061015 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061015 + cut -c9-10 + L_HH=15 + export L_HH + L_FILE_DATE=2015-06-10_15:00:00 + export L_FILE_DATE + [[ 15 -eq 00 ]] + [[ 15 -eq 06 ]] + [[ 15 -eq 12 ]] + [[ 15 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e010 wrffirechemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e010 wrfchemi_d01_2015-06-10_15:00:00 + [[ 2015061015 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_15:00:00.e010 wrfchemi_d01_2015-06-10_15:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_15:00:00.e010 wrffirechemi_d01_2015-06-10_15:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 +1 + 2> /dev/null + L_DATE=2015061016 + export L_DATE + [[ 2015061016 -le 2015061018 ]] + echo 2015061016 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061016 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061016 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061016 + cut -c9-10 + L_HH=16 + export L_HH + L_FILE_DATE=2015-06-10_16:00:00 + export L_FILE_DATE + [[ 16 -eq 00 ]] + [[ 16 -eq 06 ]] + [[ 16 -eq 12 ]] + [[ 16 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e010 wrffirechemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e010 wrfchemi_d01_2015-06-10_16:00:00 + [[ 2015061016 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_16:00:00.e010 wrfchemi_d01_2015-06-10_16:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_16:00:00.e010 wrffirechemi_d01_2015-06-10_16:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 +1 + 2> /dev/null + L_DATE=2015061017 + export L_DATE + [[ 2015061017 -le 2015061018 ]] + echo 2015061017 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061017 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061017 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061017 + cut -c9-10 + L_HH=17 + export L_HH + L_FILE_DATE=2015-06-10_17:00:00 + export L_FILE_DATE + [[ 17 -eq 00 ]] + [[ 17 -eq 06 ]] + [[ 17 -eq 12 ]] + [[ 17 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e010 wrffirechemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e010 wrfchemi_d01_2015-06-10_17:00:00 + [[ 2015061017 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_17:00:00.e010 wrfchemi_d01_2015-06-10_17:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_17:00:00.e010 wrffirechemi_d01_2015-06-10_17:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 +1 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061018 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e010 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e010 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e010 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061012 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e010 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e010 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/wrfout_d01_2015-06-10_12:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/update_bc/wrfbdy_d01_2015-06-10_12:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 10,10, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=121584 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25781.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121365 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/ensemble_mean_output + [[ 2015061012 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf 'wrfout_d01_*' + P_DATE=2015061012 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 6 + 2> /dev/null + P_END_DATE=2015061018 + export P_END_DATE + [[ 2015061012 -le 2015061018 ]] + cut -c1-4 + echo 2015061012 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061012 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061012 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061012 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-10_12:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_12:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061012_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 1 + 2> /dev/null + P_DATE=2015061013 + export P_DATE + [[ 2015061013 -le 2015061018 ]] + cut -c1-4 + echo 2015061013 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061013 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061013 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061013 + P_HH=13 + export P_HH + P_FILE_DATE=2015-06-10_13:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_13:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061013_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061013 1 + 2> /dev/null + P_DATE=2015061014 + export P_DATE + [[ 2015061014 -le 2015061018 ]] + cut -c1-4 + echo 2015061014 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061014 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061014 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061014 + P_HH=14 + export P_HH + P_FILE_DATE=2015-06-10_14:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_14:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061014_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061014 1 + 2> /dev/null + P_DATE=2015061015 + export P_DATE + [[ 2015061015 -le 2015061018 ]] + cut -c1-4 + echo 2015061015 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061015 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061015 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061015 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-10_15:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_15:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061015_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061015 1 + 2> /dev/null + P_DATE=2015061016 + export P_DATE + [[ 2015061016 -le 2015061018 ]] + cut -c1-4 + echo 2015061016 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061016 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061016 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061016 + P_HH=16 + export P_HH + P_FILE_DATE=2015-06-10_16:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_16:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061016_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061016 1 + 2> /dev/null + P_DATE=2015061017 + export P_DATE + [[ 2015061017 -le 2015061018 ]] + cut -c1-4 + echo 2015061017 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061017 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061017 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061017 + P_HH=17 + export P_HH + P_FILE_DATE=2015-06-10_17:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_17:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061017_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061017 1 + 2> /dev/null + P_DATE=2015061018 + export P_DATE + [[ 2015061018 -le 2015061018 ]] + cut -c1-4 + echo 2015061018 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061018 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061018 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061018 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-10_18:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061018_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + P_DATE=2015061019 + export P_DATE + [[ 2015061019 -le 2015061018 ]] + CYCLE_DATE=2015061018 + export CYCLE_DATE + [[ 2015061018 -le 2015061218 ]] + DATE=2015061018 + export DATE + CYCLE_PERIOD=6 + export CYCLE_PERIOD + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + START_IASI_O3_DATA=2014060100 + export START_IASI_O3_DATA + END_IASI_O3_DATA=2014073118 + export END_IASI_O3_DATA + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cut -c1-4 + echo 2015061018 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061018 + YY=15 + export YY + cut -c5-6 + echo 2015061018 + MM=06 + export MM + cut -c7-8 + echo 2015061018 + DD=10 + export DD + cut -c9-10 + echo 2015061018 + HH=18 + export HH + DATE_SHORT=15061018 + export DATE_SHORT + FILE_DATE=2015-06-10_18:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -6 + 2> /dev/null + PAST_DATE=2015061012 + export PAST_DATE + cut -c1-4 + echo 2015061012 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061012 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061012 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061012 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061012 + PAST_HH=12 + export PAST_HH + PAST_FILE_DATE=2015-06-10_12:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + NEXT_DATE=2015061100 + export NEXT_DATE + cut -c1-4 + echo 2015061100 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061100 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061100 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061100 + NEXT_DD=11 + export NEXT_DD + cut -c9-10 + echo 2015061100 + NEXT_HH=00 + export NEXT_HH + NEXT_FILE_DATE=2015-06-11_00:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=18 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 18 + 0 )) + [[ 18 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=18 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 18 + 0 )) + D_DATE=2015061018 + export D_DATE + echo 2015061018 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 64800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=64800 + export SEC_GREG + echo 2015061100 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 0 + NEXT_DAY_GREG=151371 + export NEXT_DAY_GREG + NEXT_SEC_GREG=0 + export NEXT_SEC_GREG + ASIM_WINDOW=3 + export ASIM_WINDOW + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -3 + 2> /dev/null + ASIM_MIN_DATE=2015061015 + export ASIM_MIN_DATE + cut -c1-4 + echo 2015061015 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 2015061015 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 2015061015 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 2015061015 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 2015061015 + ASIM_MIN_HH=15 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +3 + 2> /dev/null + ASIM_MAX_DATE=2015061021 + export ASIM_MAX_DATE + cut -c1-4 + echo 2015061021 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 2015061021 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 2015061021 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 2015061021 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 2015061021 + ASIM_MAX_HH=21 + export ASIM_MAX_HH + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 54000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=54000 + export ASIM_MIN_SEC_GREG + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 75600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=75600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_GEOGRID=true + export RUN_GEOGRID + RUN_UNGRIB=true + export RUN_UNGRIB + RUN_METGRID=true + export RUN_METGRID + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061018 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + FCST_PERIOD=6 + export FCST_PERIOD + (( CYCLE_PERIOD_SEC=6*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + MAX_DOMAINS=02 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + FR_DOMAIN=02 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_FR=255 + export NNXP_FR + NNYP_FR=228 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_FR=255+1 )) + (( NNYP_STAG_FR=228+1 )) + (( NNZP_STAG_FR=36+1 )) + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_FR=80 + export ISTR_FR + JSTR_FR=45 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_FR=9000 + export DX_FR + (( LBC_END=48 )) + LBC_FREQ=3 + export LBC_FREQ + (( INTERVAL_SECONDS=3*60*60 )) + LBC_START=0 + export LBC_START + START_DATE=2015061018 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + END_DATE=2015061100 + export END_DATE + cut -c1-4 + echo 2015061018 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061018 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061018 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061018 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061018 + START_HOUR=18 + export START_HOUR + START_FILE_DATE=2015-06-10_18:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061100 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061100 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061100 + END_DAY=11 + export END_DAY + cut -c9-10 + echo 2015061100 + END_HOUR=00 + export END_HOUR + END_FILE_DATE=2015-06-11_00:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + export GEOGRID_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid + export METGRID_DIR + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=6 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=10,10 + export NL_START_DAY + NL_START_HOUR=18,18 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=11,11 + export NL_END_DAY + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=10800 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60480,60480 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=120 + export NL_TIME_STEP + NNL_TIME_STEP=120 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_15:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_21:00:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 54000 + (( temp[1]=54000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=54001 + export NL_FIRST_OBS_SECONDS + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 75600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=75600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061018 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=21600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=18 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=18 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151371 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=0 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -3 + 2> /dev/null + ASIM_DATE_MIN=2015061015 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +3 + 2> /dev/null + ASIM_DATE_MAX=2015061021 + export ASIM_DATE_MAX + cut -c1-4 + echo 2015061015 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 2015061015 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 2015061015 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 2015061015 + ASIM_MN_HH=15 + export ASIM_MN_HH + cut -c1-4 + echo 2015061021 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 2015061021 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 2015061021 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 2015061021 + ASIM_MX_HH=21 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + E_DATE=2015061100 + export E_DATE + cut -c1-4 + echo 2015061100 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061100 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061100 + E_DD=11 + export E_DD + cut -c9-10 + echo 2015061100 + E_HH=00 + export E_HH + FIRE_END_DATE=2015-06-11 + export FIRE_END_DATE + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid.exe ./. + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_START_DATE=2015-06-10_18:00:00 + export NL_START_DATE + NL_END_DATE=2015-06-11_00:00:00 + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_geogrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_geogrid normal+ 01:40:00 1 1 geogrid.exe SERIAL + JOBID=19424_geogrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=geogrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=126558 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_geogrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_geogrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./geogrid.exe > index_18335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121368 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ungrib + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ungrib + rm -rf 'GRIBFILE.*' + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables/Vtable.GFS Vtable + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib.exe ./. + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061018 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 48 + 2> /dev/null + L_END_DATE=2015061218 + export L_END_DATE + cut -c1-4 + echo 2015061018 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061018 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061018 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061018 + L_START_HOUR=18 + export L_START_HOUR + cut -c1-4 + echo 2015061218 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061218 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061218 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061218 + L_END_HOUR=18 + export L_END_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_START_HOUR=18,18 + export NL_START_HOUR + cut -c1-4 + echo 2015061218 + cut -c1-4 + echo 2015061218 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061218 + cut -c5-6 + echo 2015061218 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061218 + cut -c7-8 + echo 2015061218 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061218 + cut -c9-10 + echo 2015061218 + NL_END_HOUR=18,18 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_18:00:00\',\'2015-06-12_18:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + FILES='' + [[ -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts ]] + [[ false == false ]] + CCHH=18 + export CCHH + (( LBC_ITR=0 )) + [[ 0 -le 48 ]] + [[ 0 -lt 1000 ]] + CFTM=0 + export CFTM + [[ 0 -lt 100 ]] + CFTM=00 + export CFTM + [[ 0 -lt 10 ]] + CFTM=000 + export CFTM + [[ 0 -eq 0 ]] + CFTM=000 + export CFTM + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2' + (( LBC_ITR=0+3 )) + [[ 3 -le 48 ]] + [[ 3 -lt 1000 ]] + CFTM=3 + export CFTM + [[ 3 -lt 100 ]] + CFTM=03 + export CFTM + [[ 3 -lt 10 ]] + CFTM=003 + export CFTM + [[ 3 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2' + (( LBC_ITR=3+3 )) + [[ 6 -le 48 ]] + [[ 6 -lt 1000 ]] + CFTM=6 + export CFTM + [[ 6 -lt 100 ]] + CFTM=06 + export CFTM + [[ 6 -lt 10 ]] + CFTM=006 + export CFTM + [[ 6 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2' + (( LBC_ITR=6+3 )) + [[ 9 -le 48 ]] + [[ 9 -lt 1000 ]] + CFTM=9 + export CFTM + [[ 9 -lt 100 ]] + CFTM=09 + export CFTM + [[ 9 -lt 10 ]] + CFTM=009 + export CFTM + [[ 9 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2' + (( LBC_ITR=9+3 )) + [[ 12 -le 48 ]] + [[ 12 -lt 1000 ]] + CFTM=12 + export CFTM + [[ 12 -lt 100 ]] + CFTM=012 + export CFTM + [[ 12 -lt 10 ]] + [[ 12 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2' + (( LBC_ITR=12+3 )) + [[ 15 -le 48 ]] + [[ 15 -lt 1000 ]] + CFTM=15 + export CFTM + [[ 15 -lt 100 ]] + CFTM=015 + export CFTM + [[ 15 -lt 10 ]] + [[ 15 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2' + (( LBC_ITR=15+3 )) + [[ 18 -le 48 ]] + [[ 18 -lt 1000 ]] + CFTM=18 + export CFTM + [[ 18 -lt 100 ]] + CFTM=018 + export CFTM + [[ 18 -lt 10 ]] + [[ 18 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2' + (( LBC_ITR=18+3 )) + [[ 21 -le 48 ]] + [[ 21 -lt 1000 ]] + CFTM=21 + export CFTM + [[ 21 -lt 100 ]] + CFTM=021 + export CFTM + [[ 21 -lt 10 ]] + [[ 21 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2' + (( LBC_ITR=21+3 )) + [[ 24 -le 48 ]] + [[ 24 -lt 1000 ]] + CFTM=24 + export CFTM + [[ 24 -lt 100 ]] + CFTM=024 + export CFTM + [[ 24 -lt 10 ]] + [[ 24 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2' + (( LBC_ITR=24+3 )) + [[ 27 -le 48 ]] + [[ 27 -lt 1000 ]] + CFTM=27 + export CFTM + [[ 27 -lt 100 ]] + CFTM=027 + export CFTM + [[ 27 -lt 10 ]] + [[ 27 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2' + (( LBC_ITR=27+3 )) + [[ 30 -le 48 ]] + [[ 30 -lt 1000 ]] + CFTM=30 + export CFTM + [[ 30 -lt 100 ]] + CFTM=030 + export CFTM + [[ 30 -lt 10 ]] + [[ 30 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2' + (( LBC_ITR=30+3 )) + [[ 33 -le 48 ]] + [[ 33 -lt 1000 ]] + CFTM=33 + export CFTM + [[ 33 -lt 100 ]] + CFTM=033 + export CFTM + [[ 33 -lt 10 ]] + [[ 33 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2' + (( LBC_ITR=33+3 )) + [[ 36 -le 48 ]] + [[ 36 -lt 1000 ]] + CFTM=36 + export CFTM + [[ 36 -lt 100 ]] + CFTM=036 + export CFTM + [[ 36 -lt 10 ]] + [[ 36 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f036.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f036.grib2' + (( LBC_ITR=36+3 )) + [[ 39 -le 48 ]] + [[ 39 -lt 1000 ]] + CFTM=39 + export CFTM + [[ 39 -lt 100 ]] + CFTM=039 + export CFTM + [[ 39 -lt 10 ]] + [[ 39 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f039.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f039.grib2' + (( LBC_ITR=39+3 )) + [[ 42 -le 48 ]] + [[ 42 -lt 1000 ]] + CFTM=42 + export CFTM + [[ 42 -lt 100 ]] + CFTM=042 + export CFTM + [[ 42 -lt 10 ]] + [[ 42 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f042.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f042.grib2' + (( LBC_ITR=42+3 )) + [[ 45 -le 48 ]] + [[ 45 -lt 1000 ]] + CFTM=45 + export CFTM + [[ 45 -lt 100 ]] + CFTM=045 + export CFTM + [[ 45 -lt 10 ]] + [[ 45 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f045.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f045.grib2' + (( LBC_ITR=45+3 )) + [[ 48 -le 48 ]] + [[ 48 -lt 1000 ]] + CFTM=48 + export CFTM + [[ 48 -lt 100 ]] + CFTM=048 + export CFTM + [[ 48 -lt 10 ]] + [[ 48 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f048.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f048.grib2' + (( LBC_ITR=48+3 )) + [[ 51 -le 48 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/link_grib.csh /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061018.f048.grib2 + RANDOM=42773 + JOBRND=19424_ungrib + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_ungrib normal+ 01:40:00 1 1 ungrib.exe SERIAL + JOBID=19424_ungrib + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=ungrib.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=126691 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_ungrib #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_ungrib.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./ungrib.exe > index_7536.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121369 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d01.nc ./. + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d02.nc ./. + ln -fs ../ungrib/FILE:2015-06-10_18 ../ungrib/FILE:2015-06-10_21 ../ungrib/FILE:2015-06-11_00 ../ungrib/FILE:2015-06-11_03 ../ungrib/FILE:2015-06-11_06 ../ungrib/FILE:2015-06-11_09 ../ungrib/FILE:2015-06-11_12 ../ungrib/FILE:2015-06-11_15 ../ungrib/FILE:2015-06-11_18 ../ungrib/FILE:2015-06-11_21 ../ungrib/FILE:2015-06-12_00 ../ungrib/FILE:2015-06-12_03 ../ungrib/FILE:2015-06-12_06 ../ungrib/FILE:2015-06-12_09 ../ungrib/FILE:2015-06-12_12 ../ungrib/FILE:2015-06-12_15 ../ungrib/FILE:2015-06-12_18 ./. + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid/METGRID.TBL.ARW METGRID.TBL + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid.exe . + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061018 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 48 + 2> /dev/null + L_END_DATE=2015061218 + export L_END_DATE + cut -c1-4 + echo 2015061018 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061018 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061018 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061018 + L_START_HOUR=18 + export L_START_HOUR + cut -c1-4 + echo 2015061218 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061218 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061218 + L_END_DAY=12 + export L_END_DAY + cut -c9-10 + echo 2015061218 + L_END_HOUR=18 + export L_END_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_START_HOUR=18,18 + export NL_START_HOUR + cut -c1-4 + echo 2015061218 + cut -c1-4 + echo 2015061218 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061218 + cut -c5-6 + echo 2015061218 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061218 + cut -c7-8 + echo 2015061218 + NL_END_DAY=12,12 + export NL_END_DAY + cut -c9-10 + echo 2015061218 + cut -c9-10 + echo 2015061218 + NL_END_HOUR=18,18 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-12_18:00:00\',\'2015-06-12_18:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_metgrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_metgrid normal+ 01:40:00 1 1 metgrid.exe SERIAL + JOBID=19424_metgrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=metgrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=127195 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_metgrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_metgrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./metgrid.exe > index_19757.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121370 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061018 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 48 + 2> /dev/null + P_END_DATE=2015061218 + export P_END_DATE + [[ 2015061018 -le 2015061218 ]] + cut -c1-4 + echo 2015061018 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061018 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061018 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061018 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-10_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-10_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-10_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061218 ]] + cut -c1-4 + echo 2015061021 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061021 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061021 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061021 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-10_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-10_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-10_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061218 ]] + cut -c1-4 + echo 2015061100 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061100 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061100 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061100 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-11_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061218 ]] + cut -c1-4 + echo 2015061103 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061103 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061103 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061103 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-11_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061218 ]] + cut -c1-4 + echo 2015061106 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061106 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061106 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061106 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-11_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061218 ]] + cut -c1-4 + echo 2015061109 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061109 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061109 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061109 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-11_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061218 ]] + cut -c1-4 + echo 2015061112 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061112 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061112 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061112 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-11_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061218 ]] + cut -c1-4 + echo 2015061115 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061115 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061115 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061115 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-11_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061115 3 + 2> /dev/null + P_DATE=2015061118 + export P_DATE + [[ 2015061118 -le 2015061218 ]] + cut -c1-4 + echo 2015061118 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061118 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061118 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061118 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-11_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061118 3 + 2> /dev/null + P_DATE=2015061121 + export P_DATE + [[ 2015061121 -le 2015061218 ]] + cut -c1-4 + echo 2015061121 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061121 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061121 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061121 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-11_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-11_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061121 3 + 2> /dev/null + P_DATE=2015061200 + export P_DATE + [[ 2015061200 -le 2015061218 ]] + cut -c1-4 + echo 2015061200 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061200 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061200 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061200 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-12_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-12_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061200 3 + 2> /dev/null + P_DATE=2015061203 + export P_DATE + [[ 2015061203 -le 2015061218 ]] + cut -c1-4 + echo 2015061203 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061203 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061203 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061203 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-12_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-12_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061203 3 + 2> /dev/null + P_DATE=2015061206 + export P_DATE + [[ 2015061206 -le 2015061218 ]] + cut -c1-4 + echo 2015061206 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061206 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061206 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061206 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-12_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-12_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061206 3 + 2> /dev/null + P_DATE=2015061209 + export P_DATE + [[ 2015061209 -le 2015061218 ]] + cut -c1-4 + echo 2015061209 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061209 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061209 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061209 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-12_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-12_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061209 3 + 2> /dev/null + P_DATE=2015061212 + export P_DATE + [[ 2015061212 -le 2015061218 ]] + cut -c1-4 + echo 2015061212 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061212 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061212 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061212 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-12_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-12_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061212 3 + 2> /dev/null + P_DATE=2015061215 + export P_DATE + [[ 2015061215 -le 2015061218 ]] + cut -c1-4 + echo 2015061215 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061215 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061215 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061215 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-12_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-12_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061215 3 + 2> /dev/null + P_DATE=2015061218 + export P_DATE + [[ 2015061218 -le 2015061218 ]] + cut -c1-4 + echo 2015061218 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061218 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061218 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061218 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-12_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d02.2015-06-12_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061218 3 + 2> /dev/null + P_DATE=2015061221 + export P_DATE + [[ 2015061221 -le 2015061218 ]] + P_DATE=2015061018 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + P_END_DATE=2015061100 + export P_END_DATE + [[ 2015061018 -le 2015061100 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061018 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + cut -c1-4 + echo 2015061018 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061018 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061018 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061018 + L_START_HOUR=18 + export L_START_HOUR + cut -c1-4 + echo 2015061100 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061100 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061100 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061100 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_START_HOUR=18,18 + export NL_START_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=127649 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_15460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121371 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061100 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061021 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 6 + 2> /dev/null + L_END_DATE=2015061103 + export L_END_DATE + cut -c1-4 + echo 2015061021 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061021 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061021 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061021 + L_START_HOUR=21 + export L_START_HOUR + cut -c1-4 + echo 2015061103 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061103 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061103 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061103 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061021 + cut -c1-4 + echo 2015061021 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061021 + cut -c5-6 + echo 2015061021 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061021 + cut -c7-8 + echo 2015061021 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061021 + cut -c9-10 + echo 2015061021 + NL_START_HOUR=21,21 + export NL_START_HOUR + cut -c1-4 + echo 2015061103 + cut -c1-4 + echo 2015061103 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061103 + cut -c5-6 + echo 2015061103 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061103 + cut -c7-8 + echo 2015061103 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061103 + cut -c9-10 + echo 2015061103 + NL_END_HOUR=03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_21:00:00\',\'2015-06-10_21:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_03:00:00\',\'2015-06-11_03:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 21,21, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 03,03, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=127734 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_11641.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121372 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061100 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061100 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + cut -c1-4 + echo 2015061100 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061100 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061100 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061100 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061106 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061106 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061106 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061106 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=127820 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_14506.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121373 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061100 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=6 + export L_FCST_RANGE + L_START_DATE=2015061018 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + cut -c1-4 + echo 2015061018 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061018 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061018 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061018 + L_START_HOUR=18 + export L_START_HOUR + cut -c1-4 + echo 2015061100 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061100 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061100 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061100 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061018 + cut -c1-4 + echo 2015061018 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061018 + cut -c5-6 + echo 2015061018 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061018 + cut -c7-8 + echo 2015061018 + NL_START_DAY=10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061018 + cut -c9-10 + echo 2015061018 + NL_START_HOUR=18,18 + export NL_START_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_18:00:00\',\'2015-06-10_18:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_END_DATE + P_DATE=2015061018 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + P_END_DATE=2015061100 + export P_END_DATE + [[ 2015061018 -le 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_18:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_15:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_21:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=127930 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23339.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121374 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=127959 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14475.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121375 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=127987 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14035.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121376 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128018 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22198.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121377 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128046 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27658.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121378 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128074 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17338.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121379 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128101 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2187.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121380 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128129 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13815.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121381 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128157 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121382 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_18:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_18:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_15:00:00', / &wrfvar22 time_window_max = '2015-06-10_21:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_18:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128184 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12589.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121383 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_18:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_21:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_18:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_00:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23339.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128407 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17244.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121384 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14475.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128435 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6928.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121385 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14035.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128463 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31973.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121386 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22198.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128492 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11092.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121387 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27658.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128521 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12831.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121388 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17338.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128549 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5046.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121389 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2187.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128577 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31056.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121390 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13815.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128604 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30638.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121391 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18117.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128632 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18578.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121392 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12589.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_21:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_21:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_18:00:00', / &wrfvar22 time_window_max = '2015-06-11_00:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_21:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128660 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1507.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121393 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_21:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_00:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_21:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_03:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17244.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128764 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12883.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121394 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6928.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128791 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30425.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121395 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31973.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128819 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17944.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121396 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11092.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128847 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24437.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121397 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12831.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128875 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14163.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121398 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5046.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128903 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6174.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121399 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31056.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128931 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121400 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30638.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128958 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9757.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121401 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18578.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=128986 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3931.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121402 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1507.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -f hhddmmyycc + NL_SEED_ARRAY1=1810061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 1810061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=129014 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15424.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121403 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061100 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=129281 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19396.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121404 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=129292 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23110.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121405 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=129509 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31015.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121406 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=129521 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20422.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121407 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=129732 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121408 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=129744 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15040.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121409 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130079 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29976.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121410 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130091 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29528.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121411 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130302 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9495.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121412 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130314 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_998.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121413 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130526 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31633.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121414 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130538 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14831.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121415 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130755 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4932.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121416 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130767 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19991.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121417 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130978 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31092.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121418 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=130990 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1784.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121419 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=131201 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14917.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121420 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=131213 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17022.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121421 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_END_DATE=2015061100 + export L_END_DATE + TRANDOM=42773 + [[ 2015061018 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 + 2> /dev/null + NEXT_L_DATE=2015061021 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_21:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=131424 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17594.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121422 + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_21:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 + 2> /dev/null + NEXT_L_DATE=2015061100 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_00:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_21:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=131436 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13649.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121423 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -lt 2015061100 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_18:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_18:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + LE_DATE=2015061100 + export LE_DATE + [[ 2015061018 -le 2015061100 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061018 -eq 2015061018 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=131740 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_30779.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121424 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_18:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061100 -eq 2015061018 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=133742 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_2907.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121425 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-11_00:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061100 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-11', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=42773 + JOBRND=19424_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=19424_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=135524 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_13040.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121426 + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_18:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_18:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_18:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_18:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_19:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_19:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_19:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_19:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_20:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_20:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_20:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_20:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_21:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_21:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_21:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_21:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_22:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_22:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_22:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_22:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_23:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-10_23:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_23:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-10_23:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_00:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_00:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_00:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_00:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + LE_DATE=2015061100 + export LE_DATE + [[ 2015061018 -le 2015061100 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_18:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_19:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_19:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_20:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_20:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_21:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_21:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_22:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_22:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_23:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_23:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_00:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/metgrid/met_em.d01.2015-06-12_18:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=42773 + JOBRND=19424_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 19424_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121427 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_18:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_18:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 ./. + mv wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e000 + mv wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_d01_2015-06-10_18:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136206 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.136206 rm -f tmp.136206 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e000 set files = ( wrfinput_d01_2015-06-10_18:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136279 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.136279 rm -f tmp.136279 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.136279 rm -f tmp.136279 if ( wrfinput_d01_2015-06-10_18:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00.e000 echo wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01_2015-06-10_18:00:00.e000 ln -s wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-10_18:00:00.e000 wrfinput_d01_2015-06-10_18:00:00 + mv wrfbdy_d01_2015-06-10_18:00:00.e000 wrfbdy_d01_2015-06-10_18:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=18 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136367 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.136367 rm -f tmp.136367 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e001 set files = ( wrfinput_d01_2015-06-10_18:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136444 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.136444 rm -f tmp.136444 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.136444 rm -f tmp.136444 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136529 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.136529 rm -f tmp.136529 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e002 set files = ( wrfinput_d01_2015-06-10_18:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136602 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.136602 rm -f tmp.136602 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.136602 rm -f tmp.136602 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136686 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.136686 rm -f tmp.136686 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e003 set files = ( wrfinput_d01_2015-06-10_18:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136761 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.136761 rm -f tmp.136761 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.136761 rm -f tmp.136761 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136846 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.136846 rm -f tmp.136846 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e004 set files = ( wrfinput_d01_2015-06-10_18:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.136922 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.136922 rm -f tmp.136922 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.136922 rm -f tmp.136922 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137007 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.137007 rm -f tmp.137007 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e005 set files = ( wrfinput_d01_2015-06-10_18:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137082 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.137082 rm -f tmp.137082 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.137082 rm -f tmp.137082 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137167 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.137167 rm -f tmp.137167 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e006 set files = ( wrfinput_d01_2015-06-10_18:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137241 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.137241 rm -f tmp.137241 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.137241 rm -f tmp.137241 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137330 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.137330 rm -f tmp.137330 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e007 set files = ( wrfinput_d01_2015-06-10_18:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137403 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.137403 rm -f tmp.137403 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.137403 rm -f tmp.137403 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137487 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.137487 rm -f tmp.137487 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e008 set files = ( wrfinput_d01_2015-06-10_18:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137560 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.137560 rm -f tmp.137560 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.137560 rm -f tmp.137560 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137645 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.137645 rm -f tmp.137645 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e009 set files = ( wrfinput_d01_2015-06-10_18:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137720 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.137720 rm -f tmp.137720 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.137720 rm -f tmp.137720 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_18:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_18:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137808 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.137808 rm -f tmp.137808 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_18:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_18:00:00.e010 set files = ( wrfinput_d01_2015-06-10_18:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_18:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_18:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_18:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.137881 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.137881 rm -f tmp.137881 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_18:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_18:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_18:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.137881 rm -f tmp.137881 if ( wrfinput_d01_2015-06-10_18:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 echo wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e010 ln -s wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_18:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_18:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_18:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_18:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_18:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01_2015-06-10_18:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfbdy_d01_2015-06-10_18:00:00 wrfbdy_d01_2015-06-10_18:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01_2015-06-10_18:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e001 wrfbdy_d01_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e002 wrfinput_d01_2015-06-10_18:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e002 wrfbdy_d01_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e003 wrfinput_d01_2015-06-10_18:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e003 wrfbdy_d01_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e004 wrfinput_d01_2015-06-10_18:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e004 wrfbdy_d01_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e005 wrfinput_d01_2015-06-10_18:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e005 wrfbdy_d01_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e006 wrfinput_d01_2015-06-10_18:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e006 wrfbdy_d01_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e007 wrfinput_d01_2015-06-10_18:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e007 wrfbdy_d01_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e008 wrfinput_d01_2015-06-10_18:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e008 wrfbdy_d01_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e009 wrfinput_d01_2015-06-10_18:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e009 wrfbdy_d01_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_18:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_18:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_ic/wrfinput_d01_2015-06-10_18:00:00.e010 wrfinput_d01_2015-06-10_18:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_met_bc/wrfbdy_d01_2015-06-10_18:00:00.e010 wrfbdy_d01_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061018 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + LE_DATE=2015061100 + export LE_DATE + [[ 2015061018 -le 2015061100 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_18:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_18:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_18:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e001 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e002 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e003 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e004 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e005 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e006 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e007 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e008 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e009 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_18:00:00 wrfchemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_18:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_18:00:00 wrffirechemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_18:00:00.e010 + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + rm -rf wrfbiochemi_d01_2015-06-10_18:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-10_18:00:00 wrfbiochemi_d01_2015-06-10_18:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_18:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_18:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_18:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_18:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=138415 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_618.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121428 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + cut -c1-4 + echo 2015061019 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061019 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061019 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061019 + L_HH=19 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_19:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_19:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_19:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e001 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e002 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e003 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e004 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e005 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e006 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e007 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e008 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e009 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_19:00:00 wrfchemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_19:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_19:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_19:00:00 wrffirechemi_d01_2015-06-10_19:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_19:00:00.e010 + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_19:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_19:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_19:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=138612 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_8088.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121429 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + cut -c1-4 + echo 2015061020 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061020 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061020 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061020 + L_HH=20 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_20:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_20:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_20:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e001 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e002 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e003 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e004 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e005 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e006 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e007 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e008 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e009 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_20:00:00 wrfchemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_20:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_20:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_20:00:00 wrffirechemi_d01_2015-06-10_20:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_20:00:00.e010 + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_20:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_20:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_20:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=138935 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_7185.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121430 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + cut -c1-4 + echo 2015061021 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061021 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061021 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061021 + L_HH=21 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_21:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_21:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_21:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e001 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e002 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e003 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e004 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e005 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e006 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e007 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e008 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e009 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_21:00:00 wrfchemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_21:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_21:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_21:00:00 wrffirechemi_d01_2015-06-10_21:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_21:00:00.e010 + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_21:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_21:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_21:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=139131 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_15545.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121431 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + cut -c1-4 + echo 2015061022 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061022 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061022 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061022 + L_HH=22 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_22:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_22:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_22:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e001 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e002 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e003 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e004 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e005 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e006 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e007 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e008 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e009 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_22:00:00 wrfchemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_22:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_22:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_22:00:00 wrffirechemi_d01_2015-06-10_22:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_22:00:00.e010 + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_22:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_22:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_22:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=139329 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121432 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + cut -c1-4 + echo 2015061023 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061023 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061023 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061023 + L_HH=23 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_23:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_23:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_23:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e001 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e002 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e003 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e004 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e005 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e006 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e007 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e008 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e009 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-10_23:00:00 wrfchemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_23:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_23:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-10_23:00:00 wrffirechemi_d01_2015-06-10_23:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_23:00:00.e010 + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-10_23:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_23:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_23:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=139526 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5128.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121433 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061018 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_18:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=139853 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_19491.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121434 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 18 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=18 + export L_HH + D_DATE=2015061018 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=18 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=18 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=15 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=21 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061018.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061018.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=18 + export L_HH + D_DATE=2015061018 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=18 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=10 hour0=18 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=15 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=10 end_hour=21 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061018.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061018.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/prepbufr_met_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/prepbufr_met_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061018 obs_seq_prep_2015061018.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/prepbufr_met_obs/obs_seq_prep_2015061018.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/prepbufr_met_obs/obs_seq_prep_2015061018.out ./obs_seq_MET_2015061018.out + FILE_LIST[1]=obs_seq_MET_2015061018.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/airnow_o3_obs/obs_seq_airnow_o3_2015061018.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/airnow_o3_obs/obs_seq_airnow_o3_2015061018.out ./obs_seq_AIR_O3_2015061018.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061018.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/tolnet_o3_obs/obs_seq_tolnet_o3_2015061018.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/tolnet_o3_obs/obs_seq_tolnet_o3_2015061018.out ./obs_seq_TOL_O3_2015061018.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061018.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061018.out\',\'obs_seq_AIR_O3_2015061018.out\',\'obs_seq_TOL_O3_2015061018.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=54000 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=75600 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 4 19 23 12 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=54000 which is Gregorian day: 2015 Jun 10 15:00:00 Excluding observations after: day=151370, sec=75600 which is Gregorian day: 2015 Jun 10 21:00:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061018.out inserted number 20000 of 64962 inserted number 40000 of 64962 inserted number 60000 of 64962 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 64962 Number of obs really inserted : 64962 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061018.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 64962 Number of obs to be inserted : 5670 Number of obs really inserted : 5670 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061018.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 3 Number of obs in previous seq : 70632 Number of obs to be inserted : 7260 Number of obs really inserted : 7260 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 77892 Actual number of obs in the new seq file : 77892 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151370, sec=54061 Gregorian day: 2015 Jun 10 15:01:01 Last obs time: day=151370, sec=75600 Gregorian day: 2015 Jun 10 21:00:00 Number of obs processed : 77892 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 325 obs RADIOSONDE_V_WIND_COMPONENT 325 obs RADIOSONDE_TEMPERATURE 378 obs RADIOSONDE_SPECIFIC_HUMIDITY 365 obs AIRCRAFT_U_WIND_COMPONENT 26 obs AIRCRAFT_V_WIND_COMPONENT 26 obs AIRCRAFT_TEMPERATURE 50 obs MARINE_SFC_U_WIND_COMPONENT 3196 obs MARINE_SFC_V_WIND_COMPONENT 3196 obs MARINE_SFC_TEMPERATURE 3485 obs MARINE_SFC_SPECIFIC_HUMIDITY 905 obs LAND_SFC_U_WIND_COMPONENT 668 obs LAND_SFC_V_WIND_COMPONENT 668 obs LAND_SFC_TEMPERATURE 678 obs LAND_SFC_SPECIFIC_HUMIDITY 600 obs SAT_U_WIND_COMPONENT 22839 obs SAT_V_WIND_COMPONENT 22839 obs RADIOSONDE_SURFACE_ALTIMETER 4 obs MARINE_SFC_ALTIMETER 3708 obs LAND_SFC_ALTIMETER 681 obs AIRNOW_O3 5670 obs TOLNET_O3 7260 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 4 19 23 14 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061018.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/combine_obs/obs_seq_comb_2015061018.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=42773 + JOBRND=19424_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 19424_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151370 64800 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121435 + mv obs_seq.new obs_seq_comb_filtered_2015061018.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061018 -eq 2015061006 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/preprocess_obs/obs_seq_comb_filtered_2015061018.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/preprocess_obs/obs_seq_comb_filtered_2015061018.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_18:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e001 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e002 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e003 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e004 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e005 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e006 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e007 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e008 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e009 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e010 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e001 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143359 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_3363.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121436 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e002 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143363 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_11380.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121437 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e003 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143367 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_25225.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121438 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e004 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143371 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_22188.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121439 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e005 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143375 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_5017.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121440 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e006 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143379 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_24730.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121441 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e007 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143384 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_7524.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121442 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e008 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143388 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_26374.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121443 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e009 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143392 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_20953.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121444 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_wrf_e010 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=143396 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_25636.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121445 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061018.out','obs_seq_AIR_O3_2015061018.out','obs_seq_TOL_O3_2015061018.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54000, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + true + [[ 2015061018 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061018 -ne 2015061006 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 2015061015 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 54000 + (( temp[1]=54000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=54001 + export NL_FIRST_OBS_SECONDS + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 75600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=75600 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=42773 + JOBRND=19424_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=19424_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=143808 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 19424_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_24491.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121446 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=147998 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_23949.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121447 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=148211 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_8428.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121448 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=148423 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_29052.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121449 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=148652 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_23248.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121450 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=148868 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_1697.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121451 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=149214 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_1847.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121452 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=149426 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_12339.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121453 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=149638 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121454 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=149850 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_3343.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121455 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 18, 0, 0, last_bin_center = 2015, 6, 10, 18, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 54001, last_obs_days = 151370, last_obs_seconds = 75600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061012/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_18:00:00 wrfinput_d01 + LL_DATE=2015061018 + export LL_DATE + LL_END_DATE=2015061018 + export LL_END_DATE + echo 2015061018 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061018 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061018 + cut -c7-8 + LL_DD=10 + export LL_DD + echo 2015061018 + cut -c9-10 + LL_HH=18 + export LL_HH + LL_FILE_DATE=2015-06-10_18:00:00 + export LL_FILE_DATE + [[ 2015061018 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=150067 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_17614.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121456 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-10_18:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e001 wrfbdy_d01_2015-06-10_18:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e002 wrfbdy_d01_2015-06-10_18:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e003 wrfbdy_d01_2015-06-10_18:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e004 wrfbdy_d01_2015-06-10_18:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e005 wrfbdy_d01_2015-06-10_18:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e006 wrfbdy_d01_2015-06-10_18:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e007 wrfbdy_d01_2015-06-10_18:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e008 wrfbdy_d01_2015-06-10_18:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e009 wrfbdy_d01_2015-06-10_18:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_18:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_18:00:00.e010 wrfbdy_d01_2015-06-10_18:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_18:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061018 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/real/wrfinput_d02_2015-06-10_18:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + TRANDOM=42773 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e001 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e001 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e001 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e001 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e001 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e001 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e001 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e001 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e001 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e001 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e001 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e001 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e001 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e001 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e001 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e001 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e001 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e001 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e001 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e001 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e001 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e001 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e001 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e001 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e001 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e001 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e001 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e001 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=152145 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_567.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121457 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e002 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e002 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e002 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e002 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e002 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e002 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e002 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e002 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e002 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e002 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e002 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e002 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e002 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e002 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e002 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e002 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e002 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e002 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e002 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e002 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e002 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e002 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e002 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e002 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e002 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e002 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e002 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e002 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=152314 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27189.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121458 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e003 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e003 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e003 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e003 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e003 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e003 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e003 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e003 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e003 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e003 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e003 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e003 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e003 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e003 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e003 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e003 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e003 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e003 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e003 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e003 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e003 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e003 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e003 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e003 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e003 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e003 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e003 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e003 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=152490 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_10321.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121459 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e004 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e004 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e004 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e004 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e004 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e004 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e004 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e004 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e004 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e004 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e004 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e004 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e004 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e004 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e004 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e004 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e004 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e004 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e004 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e004 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e004 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e004 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e004 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e004 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e004 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e004 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e004 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e004 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=152660 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_12335.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121460 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e005 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e005 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e005 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e005 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e005 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e005 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e005 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e005 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e005 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e005 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e005 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e005 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e005 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e005 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e005 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e005 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e005 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e005 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e005 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e005 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e005 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e005 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e005 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e005 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e005 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e005 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e005 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e005 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=152829 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_17291.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121461 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e006 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e006 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e006 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e006 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e006 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e006 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e006 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e006 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e006 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e006 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e006 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e006 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e006 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e006 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e006 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e006 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e006 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e006 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e006 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e006 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e006 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e006 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e006 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e006 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e006 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e006 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e006 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e006 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=152998 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25391.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121462 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e007 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e007 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e007 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e007 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e007 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e007 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e007 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e007 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e007 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e007 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e007 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e007 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e007 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e007 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e007 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e007 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e007 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e007 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e007 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e007 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e007 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e007 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e007 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e007 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e007 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e007 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e007 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e007 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=153172 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_12982.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121463 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e008 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e008 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e008 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e008 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e008 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e008 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e008 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e008 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e008 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e008 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e008 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e008 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e008 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e008 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e008 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e008 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e008 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e008 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e008 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e008 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e008 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e008 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e008 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e008 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e008 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e008 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e008 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e008 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=153340 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22426.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121464 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e009 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e009 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e009 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e009 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e009 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e009 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e009 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e009 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e009 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e009 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e009 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e009 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e009 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e009 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e009 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e009 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e009 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e009 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e009 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e009 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e009 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e009 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e009 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e009 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e009 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e009 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e009 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e009 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=153509 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_4635.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121465 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061100 ]] + echo 2015061018 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061018 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061018 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061018 + cut -c9-10 + L_HH=18 + export L_HH + L_FILE_DATE=2015-06-10_18:00:00 + export L_FILE_DATE + [[ 18 -eq 00 ]] + [[ 18 -eq 06 ]] + [[ 18 -eq 12 ]] + [[ 18 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_18:00:00.e010 wrfbiochemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_18:00:00.e010 wrffirechemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_18:00:00.e010 wrfchemi_d01_2015-06-10_18:00:00 + [[ 2015061018 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-10_18:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-10_18:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +1 + 2> /dev/null + L_DATE=2015061019 + export L_DATE + [[ 2015061019 -le 2015061100 ]] + echo 2015061019 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061019 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061019 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061019 + cut -c9-10 + L_HH=19 + export L_HH + L_FILE_DATE=2015-06-10_19:00:00 + export L_FILE_DATE + [[ 19 -eq 00 ]] + [[ 19 -eq 06 ]] + [[ 19 -eq 12 ]] + [[ 19 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e010 wrffirechemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e010 wrfchemi_d01_2015-06-10_19:00:00 + [[ 2015061019 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_19:00:00.e010 wrfchemi_d01_2015-06-10_19:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_19:00:00.e010 wrffirechemi_d01_2015-06-10_19:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 +1 + 2> /dev/null + L_DATE=2015061020 + export L_DATE + [[ 2015061020 -le 2015061100 ]] + echo 2015061020 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061020 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061020 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061020 + cut -c9-10 + L_HH=20 + export L_HH + L_FILE_DATE=2015-06-10_20:00:00 + export L_FILE_DATE + [[ 20 -eq 00 ]] + [[ 20 -eq 06 ]] + [[ 20 -eq 12 ]] + [[ 20 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e010 wrffirechemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e010 wrfchemi_d01_2015-06-10_20:00:00 + [[ 2015061020 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_20:00:00.e010 wrfchemi_d01_2015-06-10_20:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_20:00:00.e010 wrffirechemi_d01_2015-06-10_20:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 +1 + 2> /dev/null + L_DATE=2015061021 + export L_DATE + [[ 2015061021 -le 2015061100 ]] + echo 2015061021 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061021 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061021 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061021 + cut -c9-10 + L_HH=21 + export L_HH + L_FILE_DATE=2015-06-10_21:00:00 + export L_FILE_DATE + [[ 21 -eq 00 ]] + [[ 21 -eq 06 ]] + [[ 21 -eq 12 ]] + [[ 21 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e010 wrffirechemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e010 wrfchemi_d01_2015-06-10_21:00:00 + [[ 2015061021 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_21:00:00.e010 wrfchemi_d01_2015-06-10_21:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_21:00:00.e010 wrffirechemi_d01_2015-06-10_21:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 +1 + 2> /dev/null + L_DATE=2015061022 + export L_DATE + [[ 2015061022 -le 2015061100 ]] + echo 2015061022 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061022 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061022 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061022 + cut -c9-10 + L_HH=22 + export L_HH + L_FILE_DATE=2015-06-10_22:00:00 + export L_FILE_DATE + [[ 22 -eq 00 ]] + [[ 22 -eq 06 ]] + [[ 22 -eq 12 ]] + [[ 22 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e010 wrffirechemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e010 wrfchemi_d01_2015-06-10_22:00:00 + [[ 2015061022 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_22:00:00.e010 wrfchemi_d01_2015-06-10_22:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_22:00:00.e010 wrffirechemi_d01_2015-06-10_22:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 +1 + 2> /dev/null + L_DATE=2015061023 + export L_DATE + [[ 2015061023 -le 2015061100 ]] + echo 2015061023 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061023 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061023 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061023 + cut -c9-10 + L_HH=23 + export L_HH + L_FILE_DATE=2015-06-10_23:00:00 + export L_FILE_DATE + [[ 23 -eq 00 ]] + [[ 23 -eq 06 ]] + [[ 23 -eq 12 ]] + [[ 23 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e010 wrffirechemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e010 wrfchemi_d01_2015-06-10_23:00:00 + [[ 2015061023 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_23:00:00.e010 wrfchemi_d01_2015-06-10_23:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_23:00:00.e010 wrffirechemi_d01_2015-06-10_23:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 +1 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061100 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e010 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e010 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e010 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061018 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e010 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e010 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/wrfout_d01_2015-06-10_18:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/update_bc/wrfbdy_d01_2015-06-10_18:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 10,10, start_hour = 18,18, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 00,00, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=153678 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32670.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121466 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/ensemble_mean_output + [[ 2015061018 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf 'wrfout_d01_*' + P_DATE=2015061018 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 6 + 2> /dev/null + P_END_DATE=2015061100 + export P_END_DATE + [[ 2015061018 -le 2015061100 ]] + cut -c1-4 + echo 2015061018 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061018 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061018 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061018 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-10_18:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_18:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061018_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 1 + 2> /dev/null + P_DATE=2015061019 + export P_DATE + [[ 2015061019 -le 2015061100 ]] + cut -c1-4 + echo 2015061019 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061019 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061019 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061019 + P_HH=19 + export P_HH + P_FILE_DATE=2015-06-10_19:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_19:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061019_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061019 1 + 2> /dev/null + P_DATE=2015061020 + export P_DATE + [[ 2015061020 -le 2015061100 ]] + cut -c1-4 + echo 2015061020 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061020 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061020 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061020 + P_HH=20 + export P_HH + P_FILE_DATE=2015-06-10_20:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_20:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061020_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061020 1 + 2> /dev/null + P_DATE=2015061021 + export P_DATE + [[ 2015061021 -le 2015061100 ]] + cut -c1-4 + echo 2015061021 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061021 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061021 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061021 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-10_21:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_21:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061021_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061021 1 + 2> /dev/null + P_DATE=2015061022 + export P_DATE + [[ 2015061022 -le 2015061100 ]] + cut -c1-4 + echo 2015061022 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061022 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061022 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061022 + P_HH=22 + export P_HH + P_FILE_DATE=2015-06-10_22:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_22:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061022_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061022 1 + 2> /dev/null + P_DATE=2015061023 + export P_DATE + [[ 2015061023 -le 2015061100 ]] + cut -c1-4 + echo 2015061023 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061023 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061023 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061023 + P_HH=23 + export P_HH + P_FILE_DATE=2015-06-10_23:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_23:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061023_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061023 1 + 2> /dev/null + P_DATE=2015061100 + export P_DATE + [[ 2015061100 -le 2015061100 ]] + cut -c1-4 + echo 2015061100 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061100 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061100 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061100 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-11_00:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061100_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + P_DATE=2015061101 + export P_DATE + [[ 2015061101 -le 2015061100 ]] + CYCLE_DATE=2015061100 + export CYCLE_DATE + [[ 2015061100 -le 2015061218 ]] + DATE=2015061100 + export DATE + CYCLE_PERIOD=6 + export CYCLE_PERIOD + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + START_IASI_O3_DATA=2014060100 + export START_IASI_O3_DATA + END_IASI_O3_DATA=2014073118 + export END_IASI_O3_DATA + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cut -c1-4 + echo 2015061100 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061100 + YY=15 + export YY + cut -c5-6 + echo 2015061100 + MM=06 + export MM + cut -c7-8 + echo 2015061100 + DD=11 + export DD + cut -c9-10 + echo 2015061100 + HH=00 + export HH + DATE_SHORT=15061100 + export DATE_SHORT + FILE_DATE=2015-06-11_00:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -6 + 2> /dev/null + PAST_DATE=2015061018 + export PAST_DATE + cut -c1-4 + echo 2015061018 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061018 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061018 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061018 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061018 + PAST_HH=18 + export PAST_HH + PAST_FILE_DATE=2015-06-10_18:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + NEXT_DATE=2015061106 + export NEXT_DATE + cut -c1-4 + echo 2015061106 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061106 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061106 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061106 + NEXT_DD=11 + export NEXT_DD + cut -c9-10 + echo 2015061106 + NEXT_HH=06 + export NEXT_HH + NEXT_FILE_DATE=2015-06-11_06:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=11 + export DT_DD + DT_HH=00 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 11 + 0 )) + (( DT_HH = 00 + 0 )) + [[ 00 -eq 0 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -1 + 2> /dev/null + TMP_DATE=2015061023 + export TMP_DATE + cut -c1-4 + echo 2015061023 + TMP_YYYY=2015 + export TMP_YYYY + cut -c3-4 + echo 2015061023 + TMP_YY=15 + export TMP_YY + cut -c5-6 + echo 2015061023 + TMP_MM=06 + export TMP_MM + cut -c7-8 + echo 2015061023 + TMP_DD=10 + export TMP_DD + cut -c9-10 + echo 2015061023 + TMP_HH=23 + export TMP_HH + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=24 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 24 + 0 )) + D_DATE=2015061024 + export D_DATE + echo 2015061100 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 0 + DAY_GREG=151371 + export DAY_GREG + SEC_GREG=0 + export SEC_GREG + echo 2015061106 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 21600 + NEXT_DAY_GREG=151371 + export NEXT_DAY_GREG + NEXT_SEC_GREG=21600 + export NEXT_SEC_GREG + ASIM_WINDOW=3 + export ASIM_WINDOW + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -3 + 2> /dev/null + ASIM_MIN_DATE=2015061021 + export ASIM_MIN_DATE + cut -c1-4 + echo 2015061021 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 2015061021 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 2015061021 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 2015061021 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 2015061021 + ASIM_MIN_HH=21 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +3 + 2> /dev/null + ASIM_MAX_DATE=2015061103 + export ASIM_MAX_DATE + cut -c1-4 + echo 2015061103 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 2015061103 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 2015061103 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 2015061103 + ASIM_MAX_DD=11 + export ASIM_MAX_DD + cut -c9-10 + echo 2015061103 + ASIM_MAX_HH=03 + export ASIM_MAX_HH + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 75600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=75600 + export ASIM_MIN_SEC_GREG + echo 2015061103 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 10800 + ASIM_MAX_DAY_GREG=151371 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=10800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_GEOGRID=true + export RUN_GEOGRID + RUN_UNGRIB=true + export RUN_UNGRIB + RUN_METGRID=true + export RUN_METGRID + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061100 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + FCST_PERIOD=6 + export FCST_PERIOD + (( CYCLE_PERIOD_SEC=6*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + MAX_DOMAINS=02 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + FR_DOMAIN=02 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_FR=255 + export NNXP_FR + NNYP_FR=228 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_FR=255+1 )) + (( NNYP_STAG_FR=228+1 )) + (( NNZP_STAG_FR=36+1 )) + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_FR=80 + export ISTR_FR + JSTR_FR=45 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_FR=9000 + export DX_FR + (( LBC_END=48 )) + LBC_FREQ=3 + export LBC_FREQ + (( INTERVAL_SECONDS=3*60*60 )) + LBC_START=0 + export LBC_START + START_DATE=2015061100 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + END_DATE=2015061106 + export END_DATE + cut -c1-4 + echo 2015061100 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061100 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061100 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061100 + START_DAY=11 + export START_DAY + cut -c9-10 + echo 2015061100 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-11_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061106 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061106 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061106 + END_DAY=11 + export END_DAY + cut -c9-10 + echo 2015061106 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-11_06:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + export GEOGRID_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid + export METGRID_DIR + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=6 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=11,11 + export NL_START_DAY + NL_START_HOUR=00,00 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=11,11 + export NL_END_DAY + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=10800 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60480,60480 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=120 + export NL_TIME_STEP + NNL_TIME_STEP=120 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_21:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_03:00:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 75600 + (( temp[1]=75600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=75601 + export NL_FIRST_OBS_SECONDS + echo 2015061103 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 10800 + NL_LAST_OBS_DAYS=151371 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=10800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061100 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=21600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=11 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=0 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=11 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=0 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151371 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=21600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -3 + 2> /dev/null + ASIM_DATE_MIN=2015061021 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +3 + 2> /dev/null + ASIM_DATE_MAX=2015061103 + export ASIM_DATE_MAX + cut -c1-4 + echo 2015061021 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 2015061021 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 2015061021 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 2015061021 + ASIM_MN_HH=21 + export ASIM_MN_HH + cut -c1-4 + echo 2015061103 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 2015061103 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 2015061103 + ASIM_MX_DD=11 + export ASIM_MX_DD + cut -c9-10 + echo 2015061103 + ASIM_MX_HH=03 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-11 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + cut -c1-4 + echo 2015061106 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061106 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061106 + E_DD=11 + export E_DD + cut -c9-10 + echo 2015061106 + E_HH=06 + export E_HH + FIRE_END_DATE=2015-06-11 + export FIRE_END_DATE + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid.exe ./. + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_START_DATE=2015-06-11_00:00:00 + export NL_START_DATE + NL_END_DATE=2015-06-11_06:00:00 + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_geogrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_geogrid normal+ 01:40:00 1 1 geogrid.exe SERIAL + JOBID=19424_geogrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=geogrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=158708 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_geogrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_geogrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./geogrid.exe > index_546.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121470 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ungrib + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ungrib + rm -rf 'GRIBFILE.*' + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables/Vtable.GFS Vtable + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib.exe ./. + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061100 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 48 + 2> /dev/null + L_END_DATE=2015061300 + export L_END_DATE + cut -c1-4 + echo 2015061100 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061100 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061100 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061100 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061300 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061300 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061300 + L_END_DAY=13 + export L_END_DAY + cut -c9-10 + echo 2015061300 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061300 + cut -c1-4 + echo 2015061300 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061300 + cut -c5-6 + echo 2015061300 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061300 + cut -c7-8 + echo 2015061300 + NL_END_DAY=13,13 + export NL_END_DAY + cut -c9-10 + echo 2015061300 + cut -c9-10 + echo 2015061300 + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-13_00:00:00\',\'2015-06-13_00:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + FILES='' + [[ -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts ]] + [[ false == false ]] + CCHH=00 + export CCHH + (( LBC_ITR=0 )) + [[ 0 -le 48 ]] + [[ 0 -lt 1000 ]] + CFTM=0 + export CFTM + [[ 0 -lt 100 ]] + CFTM=00 + export CFTM + [[ 0 -lt 10 ]] + CFTM=000 + export CFTM + [[ 0 -eq 0 ]] + CFTM=000 + export CFTM + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2' + (( LBC_ITR=0+3 )) + [[ 3 -le 48 ]] + [[ 3 -lt 1000 ]] + CFTM=3 + export CFTM + [[ 3 -lt 100 ]] + CFTM=03 + export CFTM + [[ 3 -lt 10 ]] + CFTM=003 + export CFTM + [[ 3 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2' + (( LBC_ITR=3+3 )) + [[ 6 -le 48 ]] + [[ 6 -lt 1000 ]] + CFTM=6 + export CFTM + [[ 6 -lt 100 ]] + CFTM=06 + export CFTM + [[ 6 -lt 10 ]] + CFTM=006 + export CFTM + [[ 6 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2' + (( LBC_ITR=6+3 )) + [[ 9 -le 48 ]] + [[ 9 -lt 1000 ]] + CFTM=9 + export CFTM + [[ 9 -lt 100 ]] + CFTM=09 + export CFTM + [[ 9 -lt 10 ]] + CFTM=009 + export CFTM + [[ 9 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2' + (( LBC_ITR=9+3 )) + [[ 12 -le 48 ]] + [[ 12 -lt 1000 ]] + CFTM=12 + export CFTM + [[ 12 -lt 100 ]] + CFTM=012 + export CFTM + [[ 12 -lt 10 ]] + [[ 12 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2' + (( LBC_ITR=12+3 )) + [[ 15 -le 48 ]] + [[ 15 -lt 1000 ]] + CFTM=15 + export CFTM + [[ 15 -lt 100 ]] + CFTM=015 + export CFTM + [[ 15 -lt 10 ]] + [[ 15 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2' + (( LBC_ITR=15+3 )) + [[ 18 -le 48 ]] + [[ 18 -lt 1000 ]] + CFTM=18 + export CFTM + [[ 18 -lt 100 ]] + CFTM=018 + export CFTM + [[ 18 -lt 10 ]] + [[ 18 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2' + (( LBC_ITR=18+3 )) + [[ 21 -le 48 ]] + [[ 21 -lt 1000 ]] + CFTM=21 + export CFTM + [[ 21 -lt 100 ]] + CFTM=021 + export CFTM + [[ 21 -lt 10 ]] + [[ 21 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2' + (( LBC_ITR=21+3 )) + [[ 24 -le 48 ]] + [[ 24 -lt 1000 ]] + CFTM=24 + export CFTM + [[ 24 -lt 100 ]] + CFTM=024 + export CFTM + [[ 24 -lt 10 ]] + [[ 24 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2' + (( LBC_ITR=24+3 )) + [[ 27 -le 48 ]] + [[ 27 -lt 1000 ]] + CFTM=27 + export CFTM + [[ 27 -lt 100 ]] + CFTM=027 + export CFTM + [[ 27 -lt 10 ]] + [[ 27 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2' + (( LBC_ITR=27+3 )) + [[ 30 -le 48 ]] + [[ 30 -lt 1000 ]] + CFTM=30 + export CFTM + [[ 30 -lt 100 ]] + CFTM=030 + export CFTM + [[ 30 -lt 10 ]] + [[ 30 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2' + (( LBC_ITR=30+3 )) + [[ 33 -le 48 ]] + [[ 33 -lt 1000 ]] + CFTM=33 + export CFTM + [[ 33 -lt 100 ]] + CFTM=033 + export CFTM + [[ 33 -lt 10 ]] + [[ 33 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2' + (( LBC_ITR=33+3 )) + [[ 36 -le 48 ]] + [[ 36 -lt 1000 ]] + CFTM=36 + export CFTM + [[ 36 -lt 100 ]] + CFTM=036 + export CFTM + [[ 36 -lt 10 ]] + [[ 36 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f036.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f036.grib2' + (( LBC_ITR=36+3 )) + [[ 39 -le 48 ]] + [[ 39 -lt 1000 ]] + CFTM=39 + export CFTM + [[ 39 -lt 100 ]] + CFTM=039 + export CFTM + [[ 39 -lt 10 ]] + [[ 39 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f039.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f039.grib2' + (( LBC_ITR=39+3 )) + [[ 42 -le 48 ]] + [[ 42 -lt 1000 ]] + CFTM=42 + export CFTM + [[ 42 -lt 100 ]] + CFTM=042 + export CFTM + [[ 42 -lt 10 ]] + [[ 42 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f042.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f042.grib2' + (( LBC_ITR=42+3 )) + [[ 45 -le 48 ]] + [[ 45 -lt 1000 ]] + CFTM=45 + export CFTM + [[ 45 -lt 100 ]] + CFTM=045 + export CFTM + [[ 45 -lt 10 ]] + [[ 45 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f045.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f045.grib2' + (( LBC_ITR=45+3 )) + [[ 48 -le 48 ]] + [[ 48 -lt 1000 ]] + CFTM=48 + export CFTM + [[ 48 -lt 100 ]] + CFTM=048 + export CFTM + [[ 48 -lt 10 ]] + [[ 48 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f048.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f048.grib2' + (( LBC_ITR=48+3 )) + [[ 51 -le 48 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/link_grib.csh /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061100.f048.grib2 + RANDOM=42773 + JOBRND=19424_ungrib + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_ungrib normal+ 01:40:00 1 1 ungrib.exe SERIAL + JOBID=19424_ungrib + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=ungrib.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=158842 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_ungrib #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_ungrib.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./ungrib.exe > index_7020.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121471 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d01.nc ./. + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d02.nc ./. + ln -fs ../ungrib/FILE:2015-06-11_00 ../ungrib/FILE:2015-06-11_03 ../ungrib/FILE:2015-06-11_06 ../ungrib/FILE:2015-06-11_09 ../ungrib/FILE:2015-06-11_12 ../ungrib/FILE:2015-06-11_15 ../ungrib/FILE:2015-06-11_18 ../ungrib/FILE:2015-06-11_21 ../ungrib/FILE:2015-06-12_00 ../ungrib/FILE:2015-06-12_03 ../ungrib/FILE:2015-06-12_06 ../ungrib/FILE:2015-06-12_09 ../ungrib/FILE:2015-06-12_12 ../ungrib/FILE:2015-06-12_15 ../ungrib/FILE:2015-06-12_18 ../ungrib/FILE:2015-06-12_21 ../ungrib/FILE:2015-06-13_00 ./. + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid/METGRID.TBL.ARW METGRID.TBL + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid.exe . + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061100 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 48 + 2> /dev/null + L_END_DATE=2015061300 + export L_END_DATE + cut -c1-4 + echo 2015061100 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061100 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061100 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061100 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061300 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061300 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061300 + L_END_DAY=13 + export L_END_DAY + cut -c9-10 + echo 2015061300 + L_END_HOUR=00 + export L_END_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061300 + cut -c1-4 + echo 2015061300 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061300 + cut -c5-6 + echo 2015061300 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061300 + cut -c7-8 + echo 2015061300 + NL_END_DAY=13,13 + export NL_END_DAY + cut -c9-10 + echo 2015061300 + cut -c9-10 + echo 2015061300 + NL_END_HOUR=00,00 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-13_00:00:00\',\'2015-06-13_00:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_metgrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_metgrid normal+ 01:40:00 1 1 metgrid.exe SERIAL + JOBID=19424_metgrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=metgrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=159353 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_metgrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_metgrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./metgrid.exe > index_29091.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121472 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061100 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 48 + 2> /dev/null + P_END_DATE=2015061300 + export P_END_DATE + [[ 2015061100 -le 2015061300 ]] + cut -c1-4 + echo 2015061100 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061100 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061100 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061100 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-11_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061300 ]] + cut -c1-4 + echo 2015061103 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061103 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061103 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061103 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-11_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061300 ]] + cut -c1-4 + echo 2015061106 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061106 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061106 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061106 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-11_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061300 ]] + cut -c1-4 + echo 2015061109 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061109 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061109 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061109 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-11_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061300 ]] + cut -c1-4 + echo 2015061112 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061112 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061112 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061112 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-11_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061300 ]] + cut -c1-4 + echo 2015061115 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061115 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061115 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061115 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-11_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061115 3 + 2> /dev/null + P_DATE=2015061118 + export P_DATE + [[ 2015061118 -le 2015061300 ]] + cut -c1-4 + echo 2015061118 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061118 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061118 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061118 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-11_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061118 3 + 2> /dev/null + P_DATE=2015061121 + export P_DATE + [[ 2015061121 -le 2015061300 ]] + cut -c1-4 + echo 2015061121 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061121 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061121 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061121 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-11_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-11_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061121 3 + 2> /dev/null + P_DATE=2015061200 + export P_DATE + [[ 2015061200 -le 2015061300 ]] + cut -c1-4 + echo 2015061200 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061200 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061200 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061200 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-12_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061200 3 + 2> /dev/null + P_DATE=2015061203 + export P_DATE + [[ 2015061203 -le 2015061300 ]] + cut -c1-4 + echo 2015061203 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061203 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061203 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061203 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-12_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061203 3 + 2> /dev/null + P_DATE=2015061206 + export P_DATE + [[ 2015061206 -le 2015061300 ]] + cut -c1-4 + echo 2015061206 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061206 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061206 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061206 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-12_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061206 3 + 2> /dev/null + P_DATE=2015061209 + export P_DATE + [[ 2015061209 -le 2015061300 ]] + cut -c1-4 + echo 2015061209 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061209 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061209 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061209 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-12_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061209 3 + 2> /dev/null + P_DATE=2015061212 + export P_DATE + [[ 2015061212 -le 2015061300 ]] + cut -c1-4 + echo 2015061212 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061212 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061212 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061212 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-12_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061212 3 + 2> /dev/null + P_DATE=2015061215 + export P_DATE + [[ 2015061215 -le 2015061300 ]] + cut -c1-4 + echo 2015061215 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061215 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061215 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061215 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-12_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061215 3 + 2> /dev/null + P_DATE=2015061218 + export P_DATE + [[ 2015061218 -le 2015061300 ]] + cut -c1-4 + echo 2015061218 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061218 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061218 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061218 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-12_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061218 3 + 2> /dev/null + P_DATE=2015061221 + export P_DATE + [[ 2015061221 -le 2015061300 ]] + cut -c1-4 + echo 2015061221 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061221 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061221 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061221 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-12_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-12_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061221 3 + 2> /dev/null + P_DATE=2015061300 + export P_DATE + [[ 2015061300 -le 2015061300 ]] + cut -c1-4 + echo 2015061300 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061300 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061300 + P_DD=13 + export P_DD + cut -c9-10 + echo 2015061300 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-13_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-13_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d02.2015-06-13_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061300 3 + 2> /dev/null + P_DATE=2015061303 + export P_DATE + [[ 2015061303 -le 2015061300 ]] + P_DATE=2015061100 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + P_END_DATE=2015061106 + export P_END_DATE + [[ 2015061100 -le 2015061106 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061100 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + cut -c1-4 + echo 2015061100 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061100 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061100 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061100 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061106 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061106 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061106 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061106 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=159819 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_32010.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121473 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061106 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061103 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 6 + 2> /dev/null + L_END_DATE=2015061109 + export L_END_DATE + cut -c1-4 + echo 2015061103 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061103 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061103 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061103 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061109 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061109 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061109 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061109 + L_END_HOUR=09 + export L_END_HOUR + cut -c1-4 + echo 2015061103 + cut -c1-4 + echo 2015061103 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061103 + cut -c5-6 + echo 2015061103 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061103 + cut -c7-8 + echo 2015061103 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061103 + cut -c9-10 + echo 2015061103 + NL_START_HOUR=03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061109 + cut -c1-4 + echo 2015061109 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061109 + cut -c5-6 + echo 2015061109 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061109 + cut -c7-8 + echo 2015061109 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061109 + cut -c9-10 + echo 2015061109 + NL_END_HOUR=09,09 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_03:00:00\',\'2015-06-11_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_09:00:00\',\'2015-06-11_09:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 03,03, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 09,09, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=159905 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_10370.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121474 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061106 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061106 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + cut -c1-4 + echo 2015061106 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061106 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061106 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061106 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061112 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061112 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061112 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061112 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061112 + cut -c1-4 + echo 2015061112 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061112 + cut -c5-6 + echo 2015061112 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061112 + cut -c7-8 + echo 2015061112 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061112 + cut -c9-10 + echo 2015061112 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_12:00:00\',\'2015-06-11_12:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=159989 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_8101.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121475 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061106 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=6 + export L_FCST_RANGE + L_START_DATE=2015061100 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + cut -c1-4 + echo 2015061100 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061100 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061100 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061100 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061106 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061106 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061106 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061106 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061100 + cut -c1-4 + echo 2015061100 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061100 + cut -c5-6 + echo 2015061100 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061100 + cut -c7-8 + echo 2015061100 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061100 + cut -c9-10 + echo 2015061100 + NL_START_HOUR=00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_00:00:00\',\'2015-06-11_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_END_DATE + P_DATE=2015061100 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + P_END_DATE=2015061106 + export P_END_DATE + [[ 2015061100 -le 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_00:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_21:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_03:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160100 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7037.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121476 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160128 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121477 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160156 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28226.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121478 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160183 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2049.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121479 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160212 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5939.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121480 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160240 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24441.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121481 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160267 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121482 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160295 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6576.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121483 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160323 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20463.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121484 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_21:00:00', / &wrfvar22 time_window_max = '2015-06-11_03:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160350 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23980.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121485 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-11_00:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_06:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7037.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160580 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_668.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121486 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32099.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160609 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5506.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121487 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28226.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160637 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121488 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2049.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160664 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29954.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121489 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5939.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160692 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4907.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121490 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24441.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160720 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17565.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121491 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19392.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160748 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3807.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121492 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6576.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160776 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7146.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121493 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20463.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160804 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15551.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121494 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23980.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_00:00:00', / &wrfvar22 time_window_max = '2015-06-11_06:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160832 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23081.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121495 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-11_03:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_09:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_668.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160924 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24612.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121496 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5506.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160951 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10236.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121497 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11390.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=160979 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31136.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121498 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29954.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=161007 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19308.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121499 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4907.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=161035 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15796.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121500 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17565.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=161063 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28510.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121501 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3807.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=161091 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121502 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7146.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=161119 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_250.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121503 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15551.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=161146 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13842.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121504 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23081.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -f hhddmmyycc + NL_SEED_ARRAY1=0011061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0011061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=161174 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30803.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121505 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061106 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=161441 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2506.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121506 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=161453 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32237.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121507 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=161664 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30874.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121508 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=161676 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1099.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121509 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162012 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21459.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121510 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162024 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26575.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121511 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162236 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18624.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121512 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162248 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16734.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121513 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162459 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13827.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121514 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162471 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28056.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121515 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162686 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21832.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121516 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162698 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32386.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121517 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162909 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_30398.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121518 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=162921 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121519 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=163133 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18277.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121520 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=163145 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7073.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121521 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=163356 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23423.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121522 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=163368 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_31895.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121523 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_END_DATE=2015061106 + export L_END_DATE + TRANDOM=42773 + [[ 2015061100 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 + 2> /dev/null + NEXT_L_DATE=2015061103 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=163579 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_12633.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121524 + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 + 2> /dev/null + NEXT_L_DATE=2015061106 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_03:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=163591 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23672.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121525 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -lt 2015061106 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + LE_DATE=2015061106 + export LE_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061100 -eq 2015061100 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=163894 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_25160.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121526 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-11_00:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d02_2015-06-11_06:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061106 -eq 2015061100 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=165945 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_8952.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121527 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-11_06:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-11', end_date = '2015-06-11', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=42773 + JOBRND=19424_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=19424_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=167728 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_23555.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121534 + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_00:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_00:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_00:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_00:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + cut -c1-4 + echo 2015061101 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061101 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061101 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061101 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_01:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_01:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_01:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_01:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + cut -c1-4 + echo 2015061102 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061102 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061102 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061102 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_02:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_02:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_02:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_02:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + cut -c1-4 + echo 2015061103 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061103 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061103 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061103 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_03:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_03:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_03:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_03:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + cut -c1-4 + echo 2015061104 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061104 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061104 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061104 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_04:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_04:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_04:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_04:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + cut -c1-4 + echo 2015061105 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061105 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061105 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061105 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_05:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_05:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_05:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_05:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_06:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_06:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_06:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_06:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + LE_DATE=2015061106 + export LE_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_00:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + cut -c1-4 + echo 2015061101 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061101 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061101 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061101 + L_HH=01 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_01:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + cut -c1-4 + echo 2015061102 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061102 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061102 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061102 + L_HH=02 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_02:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + cut -c1-4 + echo 2015061103 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061103 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061103 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061103 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + cut -c1-4 + echo 2015061104 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061104 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061104 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061104 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + cut -c1-4 + echo 2015061105 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061105 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061105 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061105 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/metgrid/met_em.d01.2015-06-13_00:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=42773 + JOBRND=19424_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 19424_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121535 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-11_00:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-11_00:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 ./. + mv wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e000 + mv wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_d01_2015-06-11_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168413 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.168413 rm -f tmp.168413 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e000 set files = ( wrfinput_d01_2015-06-11_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168486 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.168486 rm -f tmp.168486 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e000 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.168486 rm -f tmp.168486 if ( wrfinput_d01_2015-06-11_00:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00.e000 echo wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01_2015-06-11_00:00:00.e000 ln -s wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-11_00:00:00.e000 wrfinput_d01_2015-06-11_00:00:00 + mv wrfbdy_d01_2015-06-11_00:00:00.e000 wrfbdy_d01_2015-06-11_00:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168578 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-11_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.168578 rm -f tmp.168578 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e001 set files = ( wrfinput_d01_2015-06-11_00:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168652 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.168652 rm -f tmp.168652 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e001 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.168652 rm -f tmp.168652 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168737 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-11_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.168737 rm -f tmp.168737 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e002 set files = ( wrfinput_d01_2015-06-11_00:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168810 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.168810 rm -f tmp.168810 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e002 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.168810 rm -f tmp.168810 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168895 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-11_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.168895 rm -f tmp.168895 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e003 set files = ( wrfinput_d01_2015-06-11_00:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.168972 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.168972 rm -f tmp.168972 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e003 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.168972 rm -f tmp.168972 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169056 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-11_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.169056 rm -f tmp.169056 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e004 set files = ( wrfinput_d01_2015-06-11_00:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169254 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.169254 rm -f tmp.169254 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e004 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.169254 rm -f tmp.169254 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169339 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-11_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.169339 rm -f tmp.169339 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e005 set files = ( wrfinput_d01_2015-06-11_00:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169412 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.169412 rm -f tmp.169412 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e005 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.169412 rm -f tmp.169412 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169496 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-11_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.169496 rm -f tmp.169496 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e006 set files = ( wrfinput_d01_2015-06-11_00:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169575 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.169575 rm -f tmp.169575 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e006 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.169575 rm -f tmp.169575 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169660 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-11_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.169660 rm -f tmp.169660 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e007 set files = ( wrfinput_d01_2015-06-11_00:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169733 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.169733 rm -f tmp.169733 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e007 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.169733 rm -f tmp.169733 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169819 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.169819 rm -f tmp.169819 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e008 set files = ( wrfinput_d01_2015-06-11_00:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169892 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.169892 rm -f tmp.169892 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e008 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.169892 rm -f tmp.169892 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.169976 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.169976 rm -f tmp.169976 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e009 set files = ( wrfinput_d01_2015-06-11_00:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.170053 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.170053 rm -f tmp.170053 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e009 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.170053 rm -f tmp.170053 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-11_00:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_00:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.170138 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.170138 rm -f tmp.170138 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_00:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_00:00:00.e010 set files = ( wrfinput_d01_2015-06-11_00:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_00:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-11_00:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-11_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.170211 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.170211 rm -f tmp.170211 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_00:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_00:00:00.e010 set files = ( wrfbdy_d01_2015-06-11_00:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.170211 rm -f tmp.170211 if ( wrfinput_d01_2015-06-11_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 echo wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e010 ln -s wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_00:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_00:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_00:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_00:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-11_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01_2015-06-11_00:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfbdy_d01_2015-06-11_00:00:00 wrfbdy_d01_2015-06-11_00:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01_2015-06-11_00:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e001 wrfbdy_d01_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e002 wrfinput_d01_2015-06-11_00:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e002 wrfbdy_d01_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e003 wrfinput_d01_2015-06-11_00:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e003 wrfbdy_d01_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e004 wrfinput_d01_2015-06-11_00:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e004 wrfbdy_d01_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e005 wrfinput_d01_2015-06-11_00:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e005 wrfbdy_d01_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e006 wrfinput_d01_2015-06-11_00:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e006 wrfbdy_d01_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e007 wrfinput_d01_2015-06-11_00:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e007 wrfbdy_d01_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e008 wrfinput_d01_2015-06-11_00:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e008 wrfbdy_d01_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e009 wrfinput_d01_2015-06-11_00:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e009 wrfbdy_d01_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-11_00:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_00:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_ic/wrfinput_d01_2015-06-11_00:00:00.e010 wrfinput_d01_2015-06-11_00:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_met_bc/wrfbdy_d01_2015-06-11_00:00:00.e010 wrfbdy_d01_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061100 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + LE_DATE=2015061106 + export LE_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e001 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e002 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e003 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e004 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e005 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e006 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e007 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e008 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e009 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_00:00:00 wrfchemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_00:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_00:00:00 wrffirechemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_00:00:00.e010 + [[ 00 -eq 00 ]] + rm -rf wrfbiochemi_d01_2015-06-11_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_00:00:00 wrfbiochemi_d01_2015-06-11_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_00:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_00:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=170747 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_19810.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121536 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + cut -c1-4 + echo 2015061101 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061101 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061101 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061101 + L_HH=01 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e001 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e002 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e003 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e004 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e005 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e006 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e007 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e008 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e009 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_01:00:00 wrfchemi_d01_2015-06-11_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_01:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_01:00:00 wrffirechemi_d01_2015-06-11_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_01:00:00.e010 + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_01:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_01:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=170942 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_487.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121537 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + cut -c1-4 + echo 2015061102 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061102 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061102 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061102 + L_HH=02 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e001 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e002 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e003 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e004 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e005 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e006 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e007 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e008 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e009 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_02:00:00 wrfchemi_d01_2015-06-11_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_02:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_02:00:00 wrffirechemi_d01_2015-06-11_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_02:00:00.e010 + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_02:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_02:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=171140 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11790.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121538 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + cut -c1-4 + echo 2015061103 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061103 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061103 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061103 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e001 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e002 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e003 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e004 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e005 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e006 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e007 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e008 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e009 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_03:00:00 wrfchemi_d01_2015-06-11_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_03:00:00 wrffirechemi_d01_2015-06-11_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_03:00:00.e010 + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=171336 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17609.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121539 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + cut -c1-4 + echo 2015061104 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061104 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061104 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061104 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e001 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e002 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e003 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e004 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e005 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e006 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e007 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e008 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e009 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_04:00:00 wrfchemi_d01_2015-06-11_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_04:00:00 wrffirechemi_d01_2015-06-11_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_04:00:00.e010 + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=171661 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_10750.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121540 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + cut -c1-4 + echo 2015061105 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061105 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061105 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061105 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e001 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e002 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e003 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e004 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e005 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e006 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e007 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e008 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e009 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_05:00:00 wrfchemi_d01_2015-06-11_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_05:00:00 wrffirechemi_d01_2015-06-11_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_05:00:00.e010 + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=171858 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21801.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121541 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061100 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=172085 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21531.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121542 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-11_00:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 00 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=10 + export L_DD + L_HH=24 + export L_HH + D_DATE=2015061024 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=10 + export NL_DAY + NL_HOUR=24 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=10 hour0=24 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=21 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=11 end_hour=03 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061100.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061100.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=11 + export L_DD + L_HH=00 + export L_HH + D_DATE=2015061100 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=11 + export NL_DAY + NL_HOUR=00 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=11 hour0=00 beg_year=2015 beg_mon=06 beg_day=10 beg_hour=21 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=11 end_hour=03 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061100.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061100.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/prepbufr_met_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/prepbufr_met_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/prepbufr_met_obs + L_DATE=2015061006 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +24 + 2> /dev/null + E_DATE=2015061106 + export E_DATE + [[ 2015061006 -le 2015061106 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061006 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t06z.nr prepqm15061006 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +6 + 2> /dev/null + L_DATE=2015061012 + export L_DATE + [[ 2015061012 -le 2015061106 ]] + cut -c1-4 + echo 2015061012 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061012 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061012 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061012 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061012 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t12z.nr prepqm15061012 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061012 +6 + 2> /dev/null + L_DATE=2015061018 + export L_DATE + [[ 2015061018 -le 2015061106 ]] + cut -c1-4 + echo 2015061018 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061018 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061018 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061018 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061018 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t18z.nr prepqm15061018 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061018 +6 + 2> /dev/null + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061100 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061100 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061100 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061100 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t00z.nr prepqm15061100 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +6 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061106 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 10 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 10, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061100 obs_seq_prep_2015061100.out mv: cannot stat ‘obs_seq2015061100’: No such file or directory + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/prepbufr_met_obs/obs_seq_prep_2015061100.out ]] + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/airnow_o3_obs/obs_seq_airnow_o3_2015061100.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/airnow_o3_obs/obs_seq_airnow_o3_2015061100.out ./obs_seq_AIR_O3_2015061100.out + (( NUM_FILES=0+1 )) + FILE_LIST[1]=obs_seq_AIR_O3_2015061100.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/tolnet_o3_obs/obs_seq_tolnet_o3_2015061100.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/tolnet_o3_obs/obs_seq_tolnet_o3_2015061100.out ./obs_seq_TOL_O3_2015061100.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_TOL_O3_2015061100.out + export FILE_LIST + NL_NUM_INPUT_FILES=2 + export NL_NUM_INPUT_FILES + [[ 2 -eq 8 ]] + [[ 2 -eq 7 ]] + [[ 2 -eq 6 ]] + [[ 2 -eq 5 ]] + [[ 2 -eq 4 ]] + [[ 2 -eq 3 ]] + [[ 2 -eq 2 ]] + NL_FILENAME_SEQ=$'\'obs_seq_AIR_O3_2015061100.out\',\'obs_seq_TOL_O3_2015061100.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=75600 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151371 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=10800 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 2 filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 4 21 44 17 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151370, sec=75600 which is Gregorian day: 2015 Jun 10 21:00:00 Excluding observations after: day=151371, sec=10800 which is Gregorian day: 2015 Jun 11 03:00:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061100.out -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 5729 Number of obs really inserted : 5729 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_TOL_O3_2015061100.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool ... one is: TOLNET observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: AIRNOW QC index obs_sequence_tool ... one is: TOLNET QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 5729 Number of obs to be inserted : 1815 Number of obs really inserted : 1815 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 7544 Actual number of obs in the new seq file : 7544 Processing sequence file obs_seq.proc Data Metadata: AIRNOW observation QC Metadata: AIRNOW QC index First obs time: day=151370, sec=75780 Gregorian day: 2015 Jun 10 21:03:00 Last obs time: day=151371, sec=10800 Gregorian day: 2015 Jun 11 03:00:00 Number of obs processed : 7544 --------------------------------------------------------- AIRNOW_O3 5729 obs TOLNET_O3 1815 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 4 21 44 17 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061100.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/combine_obs/obs_seq_comb_2015061100.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=42773 + JOBRND=19424_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 19424_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151371 0 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121544 + mv obs_seq.new obs_seq_comb_filtered_2015061100.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061100 -eq 2015061006 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/preprocess_obs/obs_seq_comb_filtered_2015061100.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/preprocess_obs/obs_seq_comb_filtered_2015061100.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_00:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e001 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e002 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e003 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e004 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e005 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e006 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e007 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e008 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e009 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e010 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e001 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175532 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_5820.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121547 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e002 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175536 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_2602.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121548 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e003 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175540 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_23820.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121549 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e004 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175544 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_15680.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121550 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e005 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175548 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_32307.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121551 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e006 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175552 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_26648.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121552 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e007 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175556 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_650.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121553 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e008 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175560 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9397.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121554 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e009 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175564 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_6489.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121555 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_wrf_e010 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=175568 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_17583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121556 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 2, filename_seq = 'obs_seq_AIR_O3_2015061100.out','obs_seq_TOL_O3_2015061100.out', filename_out = 'obs_seq.proc', first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75600, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + true + [[ 2015061100 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061100 -ne 2015061006 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 2015061021 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 75600 + (( temp[1]=75600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=75601 + export NL_FIRST_OBS_SECONDS + echo 2015061103 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 10800 + NL_LAST_OBS_DAYS=151371 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=10800 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=42773 + JOBRND=19424_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=19424_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=175977 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 19424_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_26372.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121557 + [[ ! -f Prior_Diag.nc ]] + [[ ! -f Posterior_Diag.nc ]] + [[ ! -f obs_seq.final ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e001 + mkdir wrk_dart_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e001 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0001\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=179129 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_3094.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121564 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e002 + mkdir wrk_dart_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e002 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0002\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=179347 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_7389.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121565 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e003 + mkdir wrk_dart_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e003 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0003\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=179559 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_28865.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121566 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e004 + mkdir wrk_dart_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e004 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0004\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=179771 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_10411.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121567 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e005 + mkdir wrk_dart_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e005 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0005\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=179983 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_14567.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121568 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e006 + mkdir wrk_dart_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e006 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0006\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=180196 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_5992.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121569 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e007 + mkdir wrk_dart_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e007 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0007\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=180412 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_3707.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121570 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e008 + mkdir wrk_dart_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e008 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0008\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=180626 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_19242.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121571 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e009 + mkdir wrk_dart_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e009 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0009\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=180838 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_16052.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121572 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + rm -rf wrk_dart_e010 + mkdir wrk_dart_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e010 + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_DART_RESTART_NAME=$'\'../filter_ic_new.0010\'' + export NL_DART_RESTART_NAME + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 0, 0, 0, last_bin_center = 2015, 6, 11, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 75601, last_obs_days = 151371, last_obs_seconds = 10800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_new.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/dart_to_wrf ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061018/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_00:00:00 wrfinput_d01 + LL_DATE=2015061100 + export LL_DATE + LL_END_DATE=2015061100 + export LL_END_DATE + echo 2015061100 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061100 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061100 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061100 + cut -c9-10 + LL_HH=00 + export LL_HH + LL_FILE_DATE=2015-06-11_00:00:00 + export LL_FILE_DATE + [[ 2015061100 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + JOBRND=42773_drt2wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_drt2wrf normal+ 01:40:00 1 1 dart_to_wrf SERIAL + JOBID=42773_drt2wrf + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=dart_to_wrf + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=181050 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_drt2wrf #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_drt2wrf.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./dart_to_wrf > index_871.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121573 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cp wrk_dart_e001/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cp wrk_dart_e002/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cp wrk_dart_e003/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cp wrk_dart_e004/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cp wrk_dart_e005/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cp wrk_dart_e006/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cp wrk_dart_e007/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cp wrk_dart_e008/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cp wrk_dart_e009/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp wrk_dart_e010/wrfinput_d01 wrfout_d01_2015-06-11_00:00:00_filt.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e001 wrfbdy_d01_2015-06-11_00:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e002 wrfbdy_d01_2015-06-11_00:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e003 wrfbdy_d01_2015-06-11_00:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e004 wrfbdy_d01_2015-06-11_00:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e005 wrfbdy_d01_2015-06-11_00:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e006 wrfbdy_d01_2015-06-11_00:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e007 wrfbdy_d01_2015-06-11_00:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e008 wrfbdy_d01_2015-06-11_00:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e009 wrfbdy_d01_2015-06-11_00:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_00:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_icbc/wrfbdy_d01_2015-06-11_00:00:00.e010 wrfbdy_d01_2015-06-11_00:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-11_00:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d02_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e004 wrfinput_d01_0004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e005 wrfinput_d01_0005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e006 wrfinput_d01_0006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e007 wrfinput_d01_0007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e008 wrfinput_d01_0008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e009 wrfinput_d01_0009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061100 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e010 wrfinput_d01_0010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/real/wrfinput_d02_2015-06-11_00:00:00 wrfinput_d02_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd + rm -rf wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 wrfinput_d01_0004 wrfinput_d01_0005 wrfinput_d01_0006 wrfinput_d01_0007 wrfinput_d01_0008 wrfinput_d01_0009 wrfinput_d01_0010 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + TRANDOM=42773 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e001 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e001 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e001 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e001/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e001/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e001 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e001 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e001 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e001 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e001 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e001 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e001 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e001 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e001 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e001 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e001 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e001 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e001 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e001 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e001 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e001 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e001 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e001 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e001 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e001 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e001 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e001 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e001 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e001 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e001 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e001 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=183125 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20327.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121578 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e002 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e002 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e002 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e002/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e002/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e002 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e002 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e002 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e002 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e002 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e002 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e002 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e002 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e002 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e002 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e002 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e002 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e002 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e002 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e002 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e002 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e002 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e002 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e002 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e002 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e002 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e002 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e002 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e002 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e002 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e002 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=183295 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30215.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121579 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e003 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e003 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e003 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e003/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e003/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e003 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e003 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e003 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e003 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e003 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e003 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e003 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e003 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e003 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e003 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e003 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e003 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e003 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e003 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e003 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e003 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e003 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e003 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e003 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e003 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e003 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e003 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e003 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e003 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e003 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e003 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=183470 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22356.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121580 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e004 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e004 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e004 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e004/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e004/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e004 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e004 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e004 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e004 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e004 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e004 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e004 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e004 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e004 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e004 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e004 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e004 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e004 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e004 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e004 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e004 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e004 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e004 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e004 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e004 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e004 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e004 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e004 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e004 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e004 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e004 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=183762 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31831.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121581 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e005 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e005 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e005 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e005/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e005/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e005 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e005 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e005 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e005 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e005 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e005 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e005 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e005 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e005 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e005 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e005 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e005 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e005 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e005 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e005 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e005 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e005 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e005 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e005 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e005 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e005 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e005 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e005 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e005 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e005 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e005 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=183931 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_13931.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121582 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e006 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e006 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e006 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e006/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e006/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e006 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e006 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e006 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e006 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e006 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e006 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e006 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e006 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e006 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e006 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e006 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e006 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e006 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e006 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e006 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e006 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e006 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e006 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e006 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e006 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e006 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e006 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e006 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e006 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e006 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e006 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=184100 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_1928.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121583 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e007 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e007 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e007 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e007/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e007/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e007 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e007 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e007 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e007 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e007 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e007 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e007 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e007 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e007 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e007 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e007 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e007 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e007 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e007 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e007 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e007 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e007 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e007 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e007 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e007 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e007 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e007 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e007 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e007 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e007 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e007 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=184275 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27928.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121584 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e008 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e008 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e008 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e008/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e008/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e008 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e008 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e008 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e008 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e008 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e008 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e008 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e008 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e008 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e008 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e008 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e008 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e008 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e008 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e008 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e008 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e008 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e008 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e008 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e008 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e008 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e008 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e008 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e008 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e008 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e008 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=184444 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_18684.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121585 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e009 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e009 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e009 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e009/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e009/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e009 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e009 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e009 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e009 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e009 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e009 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e009 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e009 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e009 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e009 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e009 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e009 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e009 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e009 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e009 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e009 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e009 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e009 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e009 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e009 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e009 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e009 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e009 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e009 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e009 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e009 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=184614 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30912.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121586 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=120 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + L_DATE=2015061100 + export L_DATE + [[ 2015061100 -le 2015061106 ]] + echo 2015061100 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061100 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061100 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061100 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-11_00:00:00 + export L_FILE_DATE + [[ 00 -eq 00 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_00:00:00.e010 wrfbiochemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_00:00:00.e010 wrffirechemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_00:00:00.e010 wrfchemi_d01_2015-06-11_00:00:00 + [[ 2015061100 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e010/wrfchemi_d01 wrfchemi_d01_2015-06-11_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrk_dart_e010/wrffirechemi_d01 wrffirechemi_d01_2015-06-11_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 +1 + 2> /dev/null + L_DATE=2015061101 + export L_DATE + [[ 2015061101 -le 2015061106 ]] + echo 2015061101 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061101 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061101 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061101 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-11_01:00:00 + export L_FILE_DATE + [[ 01 -eq 00 ]] + [[ 01 -eq 06 ]] + [[ 01 -eq 12 ]] + [[ 01 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e010 wrffirechemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e010 wrfchemi_d01_2015-06-11_01:00:00 + [[ 2015061101 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_01:00:00.e010 wrfchemi_d01_2015-06-11_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_01:00:00.e010 wrffirechemi_d01_2015-06-11_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 +1 + 2> /dev/null + L_DATE=2015061102 + export L_DATE + [[ 2015061102 -le 2015061106 ]] + echo 2015061102 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061102 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061102 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061102 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-11_02:00:00 + export L_FILE_DATE + [[ 02 -eq 00 ]] + [[ 02 -eq 06 ]] + [[ 02 -eq 12 ]] + [[ 02 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e010 wrffirechemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e010 wrfchemi_d01_2015-06-11_02:00:00 + [[ 2015061102 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_02:00:00.e010 wrfchemi_d01_2015-06-11_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_02:00:00.e010 wrffirechemi_d01_2015-06-11_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 +1 + 2> /dev/null + L_DATE=2015061103 + export L_DATE + [[ 2015061103 -le 2015061106 ]] + echo 2015061103 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061103 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061103 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061103 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-11_03:00:00 + export L_FILE_DATE + [[ 03 -eq 00 ]] + [[ 03 -eq 06 ]] + [[ 03 -eq 12 ]] + [[ 03 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e010 wrffirechemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e010 wrfchemi_d01_2015-06-11_03:00:00 + [[ 2015061103 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_03:00:00.e010 wrfchemi_d01_2015-06-11_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_03:00:00.e010 wrffirechemi_d01_2015-06-11_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 +1 + 2> /dev/null + L_DATE=2015061104 + export L_DATE + [[ 2015061104 -le 2015061106 ]] + echo 2015061104 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061104 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061104 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061104 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-11_04:00:00 + export L_FILE_DATE + [[ 04 -eq 00 ]] + [[ 04 -eq 06 ]] + [[ 04 -eq 12 ]] + [[ 04 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e010 wrffirechemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e010 wrfchemi_d01_2015-06-11_04:00:00 + [[ 2015061104 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_04:00:00.e010 wrfchemi_d01_2015-06-11_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_04:00:00.e010 wrffirechemi_d01_2015-06-11_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 +1 + 2> /dev/null + L_DATE=2015061105 + export L_DATE + [[ 2015061105 -le 2015061106 ]] + echo 2015061105 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061105 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061105 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061105 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-11_05:00:00 + export L_FILE_DATE + [[ 05 -eq 00 ]] + [[ 05 -eq 06 ]] + [[ 05 -eq 12 ]] + [[ 05 -eq 18 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e010 wrffirechemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e010 wrfchemi_d01_2015-06-11_05:00:00 + [[ 2015061105 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_05:00:00.e010 wrfchemi_d01_2015-06-11_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_05:00:00.e010 wrffirechemi_d01_2015-06-11_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 +1 + 2> /dev/null + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061106 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061106 + cut -c7-8 + L_DD=11 + export L_DD + echo 2015061106 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e010 wrfbiochemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e010 wrffirechemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e010 wrfchemi_d01_2015-06-11_06:00:00 + [[ 2015061106 -eq 2015061100 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e010 wrfchemi_d01_2015-06-11_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e010 wrffirechemi_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061106 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/wrfout_d01_2015-06-11_00:00:00_filt.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/update_bc/wrfbdy_d01_2015-06-11_00:00:00_filt.e010 wrfbdy_d01 + [[ .false. == .true. ]] + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 00,00, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 06,06, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=42773_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=42773_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=184783 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 42773_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_17133.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121587 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/ensemble_mean_output + [[ 2015061100 -eq 2015061000 ]] + OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + export OUTPUT_DIR + rm -rf 'wrfout_d01_*' + P_DATE=2015061100 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 6 + 2> /dev/null + P_END_DATE=2015061106 + export P_END_DATE + [[ 2015061100 -le 2015061106 ]] + cut -c1-4 + echo 2015061100 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061100 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061100 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061100 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-11_00:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_00:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061100_mean + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061100 1 + 2> /dev/null + P_DATE=2015061101 + export P_DATE + [[ 2015061101 -le 2015061106 ]] + cut -c1-4 + echo 2015061101 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061101 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061101 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061101 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-11_01:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_01:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061101_mean ncea: ERROR file wrfout_d01_0005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061101 1 + 2> /dev/null + P_DATE=2015061102 + export P_DATE + [[ 2015061102 -le 2015061106 ]] + cut -c1-4 + echo 2015061102 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061102 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061102 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061102 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-11_02:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_02:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061102_mean ncea: ERROR file wrfout_d01_0005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061102 1 + 2> /dev/null + P_DATE=2015061103 + export P_DATE + [[ 2015061103 -le 2015061106 ]] + cut -c1-4 + echo 2015061103 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061103 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061103 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061103 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-11_03:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_03:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061103_mean ncea: ERROR file wrfout_d01_0005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061103 1 + 2> /dev/null + P_DATE=2015061104 + export P_DATE + [[ 2015061104 -le 2015061106 ]] + cut -c1-4 + echo 2015061104 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061104 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061104 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061104 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-11_04:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_04:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061104_mean ncea: ERROR file wrfout_d01_0005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061104 1 + 2> /dev/null + P_DATE=2015061105 + export P_DATE + [[ 2015061105 -le 2015061106 ]] + cut -c1-4 + echo 2015061105 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061105 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061105 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061105 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-11_05:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_05:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061105_mean ncea: ERROR file wrfout_d01_0005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061105 1 + 2> /dev/null + P_DATE=2015061106 + export P_DATE + [[ 2015061106 -le 2015061106 ]] + echo 2015061106 + cut -c1-4 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061106 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061106 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061106 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-11_06:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_06:00:00 wrfout_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061106_mean ncea: ERROR file wrfout_d01_0005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 1 + 2> /dev/null + P_DATE=2015061107 + export P_DATE + [[ 2015061107 -le 2015061106 ]] + CYCLE_DATE=2015061106 + export CYCLE_DATE + [[ 2015061106 -le 2015061218 ]] + DATE=2015061106 + export DATE + CYCLE_PERIOD=6 + export CYCLE_PERIOD + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + START_IASI_O3_DATA=2014060100 + export START_IASI_O3_DATA + END_IASI_O3_DATA=2014073118 + export END_IASI_O3_DATA + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + cut -c1-4 + echo 2015061106 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061106 + YY=15 + export YY + cut -c5-6 + echo 2015061106 + MM=06 + export MM + cut -c7-8 + echo 2015061106 + DD=11 + export DD + cut -c9-10 + echo 2015061106 + HH=06 + export HH + DATE_SHORT=15061106 + export DATE_SHORT + FILE_DATE=2015-06-11_06:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 -6 + 2> /dev/null + PAST_DATE=2015061100 + export PAST_DATE + cut -c1-4 + echo 2015061100 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061100 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061100 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061100 + PAST_DD=11 + export PAST_DD + cut -c9-10 + echo 2015061100 + PAST_HH=00 + export PAST_HH + PAST_FILE_DATE=2015-06-11_00:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + NEXT_DATE=2015061112 + export NEXT_DATE + cut -c1-4 + echo 2015061112 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061112 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061112 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061112 + NEXT_DD=11 + export NEXT_DD + cut -c9-10 + echo 2015061112 + NEXT_HH=12 + export NEXT_HH + NEXT_FILE_DATE=2015-06-11_12:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=11 + export DT_DD + DT_HH=06 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 11 + 0 )) + (( DT_HH = 06 + 0 )) + [[ 06 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=11 + export D_DD + D_HH=06 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 11 + 0 )) + (( DD_HH = 06 + 0 )) + D_DATE=2015061106 + export D_DATE + echo 2015061106 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 21600 + DAY_GREG=151371 + export DAY_GREG + SEC_GREG=21600 + export SEC_GREG + echo 2015061112 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151371 43200 + NEXT_DAY_GREG=151371 + export NEXT_DAY_GREG + NEXT_SEC_GREG=43200 + export NEXT_SEC_GREG + ASIM_WINDOW=3 + export ASIM_WINDOW + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 -3 + 2> /dev/null + ASIM_MIN_DATE=2015061103 + export ASIM_MIN_DATE + cut -c1-4 + echo 2015061103 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 2015061103 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 2015061103 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 2015061103 + ASIM_MIN_DD=11 + export ASIM_MIN_DD + cut -c9-10 + echo 2015061103 + ASIM_MIN_HH=03 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +3 + 2> /dev/null + ASIM_MAX_DATE=2015061109 + export ASIM_MAX_DATE + cut -c1-4 + echo 2015061109 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 2015061109 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 2015061109 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 2015061109 + ASIM_MAX_DD=11 + export ASIM_MAX_DD + cut -c9-10 + echo 2015061109 + ASIM_MAX_HH=09 + export ASIM_MAX_HH + echo 2015061103 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 10800 + ASIM_MIN_DAY_GREG=151371 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=10800 + export ASIM_MIN_SEC_GREG + echo 2015061109 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 32400 + ASIM_MAX_DAY_GREG=151371 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=32400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_GEOGRID=true + export RUN_GEOGRID + RUN_UNGRIB=true + export RUN_UNGRIB + RUN_METGRID=true + export RUN_METGRID + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=true + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=true + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=true + export RUN_MET_OBS + RUN_COMBINE_OBS=true + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=true + export RUN_PREPROCESS_OBS + [[ 2015061106 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=false + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=true + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=true + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_FR=false + export RUN_WRFCHEM_CYCLE_FR + RUN_ENSMEAN_CYCLE_FR=false + export RUN_ENSMEAN_CYCLE_FR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + FCST_PERIOD=6 + export FCST_PERIOD + (( CYCLE_PERIOD_SEC=6*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + MAX_DOMAINS=02 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + FR_DOMAIN=02 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_FR=255 + export NNXP_FR + NNYP_FR=228 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_FR=255+1 )) + (( NNYP_STAG_FR=228+1 )) + (( NNZP_STAG_FR=36+1 )) + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_FR=80 + export ISTR_FR + JSTR_FR=45 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_FR=9000 + export DX_FR + (( LBC_END=48 )) + LBC_FREQ=3 + export LBC_FREQ + (( INTERVAL_SECONDS=3*60*60 )) + LBC_START=0 + export LBC_START + START_DATE=2015061106 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + END_DATE=2015061112 + export END_DATE + cut -c1-4 + echo 2015061106 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061106 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061106 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061106 + START_DAY=11 + export START_DAY + cut -c9-10 + echo 2015061106 + START_HOUR=06 + export START_HOUR + START_FILE_DATE=2015-06-11_06:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061112 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061112 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061112 + END_DAY=11 + export END_DAY + cut -c9-10 + echo 2015061112 + END_HOUR=12 + export END_HOUR + END_FILE_DATE=2015-06-11_12:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + export GEOGRID_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid + export METGRID_DIR + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_FR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_cycle_fr + export WRFCHEM_CYCLE_FR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=6 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06 + export NL_START_MONTH + NL_START_DAY=11,11 + export NL_START_DAY + NL_START_HOUR=06,06 + export NL_START_HOUR + NL_START_MINUTE=00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06 + export NL_END_MONTH + NL_END_DAY=11,11 + export NL_END_DAY + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_END_MINUTE=00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=10800 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60480,60480 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=120 + export NL_TIME_STEP + NNL_TIME_STEP=120 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=02 + export NL_MAX_DOM + NL_S_WE=1,1 + export NL_S_WE + NL_E_WE=196,256 + export NL_E_WE + NL_S_SN=1,1 + export NL_S_SN + NL_E_SN=168,229 + export NL_E_SN + NL_S_VERT=1,1 + export NL_S_VERT + NL_E_VERT=37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0 + export NL_BLDT + NL_CU_PHYSICS=1,0 + export NL_CU_PHYSICS + NL_CUDT=0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30 + export NL_PHOTDT + NL_CHEMDT=1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-11_03:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_09:00:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 2015061103 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 10800 + (( temp[1]=10800+1 )) + NL_FIRST_OBS_DAYS=151371 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=10801 + export NL_FIRST_OBS_SECONDS + echo 2015061109 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 32400 + NL_LAST_OBS_DAYS=151371 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=32400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061106 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=01 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=21600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=11 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=6 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=11 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=6 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151371 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=43200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 -3 + 2> /dev/null + ASIM_DATE_MIN=2015061103 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +3 + 2> /dev/null + ASIM_DATE_MAX=2015061109 + export ASIM_DATE_MAX + cut -c1-4 + echo 2015061103 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 2015061103 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 2015061103 + ASIM_MN_DD=11 + export ASIM_MN_DD + cut -c9-10 + echo 2015061103 + ASIM_MN_HH=03 + export ASIM_MN_HH + cut -c1-4 + echo 2015061109 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 2015061109 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 2015061109 + ASIM_MX_DD=11 + export ASIM_MX_DD + cut -c9-10 + echo 2015061109 + ASIM_MX_HH=09 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-11 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + E_DATE=2015061112 + export E_DATE + cut -c1-4 + echo 2015061112 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061112 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061112 + E_DD=11 + export E_DD + cut -c9-10 + echo 2015061112 + E_HH=12 + export E_HH + FIRE_END_DATE=2015-06-11 + export FIRE_END_DATE + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid.exe ./. + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_START_DATE=2015-06-11_06:00:00 + export NL_START_DATE + NL_END_DATE=2015-06-11_12:00:00 + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_geogrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_geogrid normal+ 01:40:00 1 1 geogrid.exe SERIAL + JOBID=19424_geogrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=geogrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=189464 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_geogrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_geogrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./geogrid.exe > index_27721.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121592 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/ungrib + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/ungrib + rm -rf 'GRIBFILE.*' + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables/Vtable.GFS Vtable + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib.exe ./. + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061106 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 48 + 2> /dev/null + L_END_DATE=2015061306 + export L_END_DATE + cut -c1-4 + echo 2015061106 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061106 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061106 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061106 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061306 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061306 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061306 + L_END_DAY=13 + export L_END_DAY + cut -c9-10 + echo 2015061306 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061306 + cut -c1-4 + echo 2015061306 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061306 + cut -c5-6 + echo 2015061306 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061306 + cut -c7-8 + echo 2015061306 + NL_END_DAY=13,13 + export NL_END_DAY + cut -c9-10 + echo 2015061306 + cut -c9-10 + echo 2015061306 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-13_06:00:00\',\'2015-06-13_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + FILES='' + [[ -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts ]] + [[ false == false ]] + CCHH=06 + export CCHH + (( LBC_ITR=0 )) + [[ 0 -le 48 ]] + [[ 0 -lt 1000 ]] + CFTM=0 + export CFTM + [[ 0 -lt 100 ]] + CFTM=00 + export CFTM + [[ 0 -lt 10 ]] + CFTM=000 + export CFTM + [[ 0 -eq 0 ]] + CFTM=000 + export CFTM + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2' + (( LBC_ITR=0+3 )) + [[ 3 -le 48 ]] + [[ 3 -lt 1000 ]] + CFTM=3 + export CFTM + [[ 3 -lt 100 ]] + CFTM=03 + export CFTM + [[ 3 -lt 10 ]] + CFTM=003 + export CFTM + [[ 3 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2' + (( LBC_ITR=3+3 )) + [[ 6 -le 48 ]] + [[ 6 -lt 1000 ]] + CFTM=6 + export CFTM + [[ 6 -lt 100 ]] + CFTM=06 + export CFTM + [[ 6 -lt 10 ]] + CFTM=006 + export CFTM + [[ 6 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2' + (( LBC_ITR=6+3 )) + [[ 9 -le 48 ]] + [[ 9 -lt 1000 ]] + CFTM=9 + export CFTM + [[ 9 -lt 100 ]] + CFTM=09 + export CFTM + [[ 9 -lt 10 ]] + CFTM=009 + export CFTM + [[ 9 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2' + (( LBC_ITR=9+3 )) + [[ 12 -le 48 ]] + [[ 12 -lt 1000 ]] + CFTM=12 + export CFTM + [[ 12 -lt 100 ]] + CFTM=012 + export CFTM + [[ 12 -lt 10 ]] + [[ 12 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2' + (( LBC_ITR=12+3 )) + [[ 15 -le 48 ]] + [[ 15 -lt 1000 ]] + CFTM=15 + export CFTM + [[ 15 -lt 100 ]] + CFTM=015 + export CFTM + [[ 15 -lt 10 ]] + [[ 15 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2' + (( LBC_ITR=15+3 )) + [[ 18 -le 48 ]] + [[ 18 -lt 1000 ]] + CFTM=18 + export CFTM + [[ 18 -lt 100 ]] + CFTM=018 + export CFTM + [[ 18 -lt 10 ]] + [[ 18 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2' + (( LBC_ITR=18+3 )) + [[ 21 -le 48 ]] + [[ 21 -lt 1000 ]] + CFTM=21 + export CFTM + [[ 21 -lt 100 ]] + CFTM=021 + export CFTM + [[ 21 -lt 10 ]] + [[ 21 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2' + (( LBC_ITR=21+3 )) + [[ 24 -le 48 ]] + [[ 24 -lt 1000 ]] + CFTM=24 + export CFTM + [[ 24 -lt 100 ]] + CFTM=024 + export CFTM + [[ 24 -lt 10 ]] + [[ 24 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2' + (( LBC_ITR=24+3 )) + [[ 27 -le 48 ]] + [[ 27 -lt 1000 ]] + CFTM=27 + export CFTM + [[ 27 -lt 100 ]] + CFTM=027 + export CFTM + [[ 27 -lt 10 ]] + [[ 27 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2' + (( LBC_ITR=27+3 )) + [[ 30 -le 48 ]] + [[ 30 -lt 1000 ]] + CFTM=30 + export CFTM + [[ 30 -lt 100 ]] + CFTM=030 + export CFTM + [[ 30 -lt 10 ]] + [[ 30 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2' + (( LBC_ITR=30+3 )) + [[ 33 -le 48 ]] + [[ 33 -lt 1000 ]] + CFTM=33 + export CFTM + [[ 33 -lt 100 ]] + CFTM=033 + export CFTM + [[ 33 -lt 10 ]] + [[ 33 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2' + (( LBC_ITR=33+3 )) + [[ 36 -le 48 ]] + [[ 36 -lt 1000 ]] + CFTM=36 + export CFTM + [[ 36 -lt 100 ]] + CFTM=036 + export CFTM + [[ 36 -lt 10 ]] + [[ 36 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f036.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f036.grib2' + (( LBC_ITR=36+3 )) + [[ 39 -le 48 ]] + [[ 39 -lt 1000 ]] + CFTM=39 + export CFTM + [[ 39 -lt 100 ]] + CFTM=039 + export CFTM + [[ 39 -lt 10 ]] + [[ 39 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f039.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f039.grib2' + (( LBC_ITR=39+3 )) + [[ 42 -le 48 ]] + [[ 42 -lt 1000 ]] + CFTM=42 + export CFTM + [[ 42 -lt 100 ]] + CFTM=042 + export CFTM + [[ 42 -lt 10 ]] + [[ 42 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f042.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f042.grib2' + (( LBC_ITR=42+3 )) + [[ 45 -le 48 ]] + [[ 45 -lt 1000 ]] + CFTM=45 + export CFTM + [[ 45 -lt 100 ]] + CFTM=045 + export CFTM + [[ 45 -lt 10 ]] + [[ 45 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f045.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f045.grib2' + (( LBC_ITR=45+3 )) + [[ 48 -le 48 ]] + [[ 48 -lt 1000 ]] + CFTM=48 + export CFTM + [[ 48 -lt 100 ]] + CFTM=048 + export CFTM + [[ 48 -lt 10 ]] + [[ 48 -eq 0 ]] + FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f048.grib2 + export FILE + FILES=' /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f048.grib2' + (( LBC_ITR=48+3 )) + [[ 51 -le 48 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/link_grib.csh /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f000.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f003.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f006.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f009.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f012.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f015.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f018.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f021.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f024.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f027.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f030.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f033.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f036.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f039.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f042.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f045.grib2 /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts/gfs.0p25.2015061106.f048.grib2 + RANDOM=42773 + JOBRND=19424_ungrib + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_ungrib normal+ 01:40:00 1 1 ungrib.exe SERIAL + JOBID=19424_ungrib + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=ungrib.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=189597 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_ungrib #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_ungrib.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./ungrib.exe > index_8801.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121593 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d01.nc ./. + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/geogrid/geo_em.d02.nc ./. + ln -fs ../ungrib/FILE:2015-06-11_06 ../ungrib/FILE:2015-06-11_09 ../ungrib/FILE:2015-06-11_12 ../ungrib/FILE:2015-06-11_15 ../ungrib/FILE:2015-06-11_18 ../ungrib/FILE:2015-06-11_21 ../ungrib/FILE:2015-06-12_00 ../ungrib/FILE:2015-06-12_03 ../ungrib/FILE:2015-06-12_06 ../ungrib/FILE:2015-06-12_09 ../ungrib/FILE:2015-06-12_12 ../ungrib/FILE:2015-06-12_15 ../ungrib/FILE:2015-06-12_18 ../ungrib/FILE:2015-06-12_21 ../ungrib/FILE:2015-06-13_00 ../ungrib/FILE:2015-06-13_03 ../ungrib/FILE:2015-06-13_06 ./. + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid/METGRID.TBL.ARW METGRID.TBL + ln -fs /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/metgrid.exe . + L_FCST_RANGE=48 + export L_FCST_RANGE + L_START_DATE=2015061106 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 48 + 2> /dev/null + L_END_DATE=2015061306 + export L_END_DATE + cut -c1-4 + echo 2015061106 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061106 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061106 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061106 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061306 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061306 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061306 + L_END_DAY=13 + export L_END_DAY + cut -c9-10 + echo 2015061306 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061306 + cut -c1-4 + echo 2015061306 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061306 + cut -c5-6 + echo 2015061306 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061306 + cut -c7-8 + echo 2015061306 + NL_END_DAY=13,13 + export NL_END_DAY + cut -c9-10 + echo 2015061306 + cut -c9-10 + echo 2015061306 + NL_END_HOUR=06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-13_06:00:00\',\'2015-06-13_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wps_namelist_RT.ksh + RANDOM=42773 + JOBRND=19424_metgrid + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_metgrid normal+ 01:40:00 1 1 metgrid.exe SERIAL + JOBID=19424_metgrid + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=metgrid.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=189977 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_metgrid #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_metgrid.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./metgrid.exe > index_17115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121594 + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + P_DATE=2015061106 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 48 + 2> /dev/null + P_END_DATE=2015061306 + export P_END_DATE + [[ 2015061106 -le 2015061306 ]] + cut -c1-4 + echo 2015061106 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061106 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061106 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061106 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-11_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-11_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061306 ]] + cut -c1-4 + echo 2015061109 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061109 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061109 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061109 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-11_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-11_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061306 ]] + cut -c1-4 + echo 2015061112 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061112 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061112 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061112 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-11_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-11_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061306 ]] + cut -c1-4 + echo 2015061115 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061115 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061115 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061115 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-11_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-11_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061115 3 + 2> /dev/null + P_DATE=2015061118 + export P_DATE + [[ 2015061118 -le 2015061306 ]] + cut -c1-4 + echo 2015061118 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061118 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061118 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061118 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-11_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-11_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061118 3 + 2> /dev/null + P_DATE=2015061121 + export P_DATE + [[ 2015061121 -le 2015061306 ]] + cut -c1-4 + echo 2015061121 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061121 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061121 + P_DD=11 + export P_DD + cut -c9-10 + echo 2015061121 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-11_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-11_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061121 3 + 2> /dev/null + P_DATE=2015061200 + export P_DATE + [[ 2015061200 -le 2015061306 ]] + cut -c1-4 + echo 2015061200 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061200 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061200 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061200 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-12_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061200 3 + 2> /dev/null + P_DATE=2015061203 + export P_DATE + [[ 2015061203 -le 2015061306 ]] + cut -c1-4 + echo 2015061203 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061203 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061203 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061203 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-12_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061203 3 + 2> /dev/null + P_DATE=2015061206 + export P_DATE + [[ 2015061206 -le 2015061306 ]] + cut -c1-4 + echo 2015061206 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061206 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061206 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061206 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-12_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061206 3 + 2> /dev/null + P_DATE=2015061209 + export P_DATE + [[ 2015061209 -le 2015061306 ]] + cut -c1-4 + echo 2015061209 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061209 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061209 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061209 + P_HH=09 + export P_HH + P_FILE_DATE=2015-06-12_09:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_09:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_09:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061209 3 + 2> /dev/null + P_DATE=2015061212 + export P_DATE + [[ 2015061212 -le 2015061306 ]] + cut -c1-4 + echo 2015061212 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061212 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061212 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061212 + P_HH=12 + export P_HH + P_FILE_DATE=2015-06-12_12:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_12:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_12:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061212 3 + 2> /dev/null + P_DATE=2015061215 + export P_DATE + [[ 2015061215 -le 2015061306 ]] + cut -c1-4 + echo 2015061215 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061215 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061215 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061215 + P_HH=15 + export P_HH + P_FILE_DATE=2015-06-12_15:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_15:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_15:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061215 3 + 2> /dev/null + P_DATE=2015061218 + export P_DATE + [[ 2015061218 -le 2015061306 ]] + cut -c1-4 + echo 2015061218 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061218 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061218 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061218 + P_HH=18 + export P_HH + P_FILE_DATE=2015-06-12_18:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_18:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_18:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061218 3 + 2> /dev/null + P_DATE=2015061221 + export P_DATE + [[ 2015061221 -le 2015061306 ]] + cut -c1-4 + echo 2015061221 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061221 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061221 + P_DD=12 + export P_DD + cut -c9-10 + echo 2015061221 + P_HH=21 + export P_HH + P_FILE_DATE=2015-06-12_21:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_21:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-12_21:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061221 3 + 2> /dev/null + P_DATE=2015061300 + export P_DATE + [[ 2015061300 -le 2015061306 ]] + cut -c1-4 + echo 2015061300 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061300 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061300 + P_DD=13 + export P_DD + cut -c9-10 + echo 2015061300 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-13_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-13_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-13_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061300 3 + 2> /dev/null + P_DATE=2015061303 + export P_DATE + [[ 2015061303 -le 2015061306 ]] + cut -c1-4 + echo 2015061303 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061303 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061303 + P_DD=13 + export P_DD + cut -c9-10 + echo 2015061303 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-13_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-13_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-13_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061303 3 + 2> /dev/null + P_DATE=2015061306 + export P_DATE + [[ 2015061306 -le 2015061306 ]] + cut -c1-4 + echo 2015061306 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061306 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061306 + P_DD=13 + export P_DD + cut -c9-10 + echo 2015061306 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-13_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061306 3 + 2> /dev/null + P_DATE=2015061309 + export P_DATE + [[ 2015061309 -le 2015061306 ]] + P_DATE=2015061106 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + P_END_DATE=2015061112 + export P_END_DATE + [[ 2015061106 -le 2015061112 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061106 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + cut -c1-4 + echo 2015061106 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061106 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061106 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061106 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061112 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061112 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061112 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061112 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061112 + cut -c1-4 + echo 2015061112 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061112 + cut -c5-6 + echo 2015061112 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061112 + cut -c7-8 + echo 2015061112 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061112 + cut -c9-10 + echo 2015061112 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_12:00:00\',\'2015-06-11_12:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190471 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_22768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121595 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061112 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061109 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 6 + 2> /dev/null + L_END_DATE=2015061115 + export L_END_DATE + cut -c1-4 + echo 2015061109 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061109 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061109 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061109 + L_START_HOUR=09 + export L_START_HOUR + cut -c1-4 + echo 2015061115 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061115 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061115 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061115 + L_END_HOUR=15 + export L_END_HOUR + cut -c1-4 + echo 2015061109 + cut -c1-4 + echo 2015061109 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061109 + cut -c5-6 + echo 2015061109 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061109 + cut -c7-8 + echo 2015061109 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061109 + cut -c9-10 + echo 2015061109 + NL_START_HOUR=09,09 + export NL_START_HOUR + cut -c1-4 + echo 2015061115 + cut -c1-4 + echo 2015061115 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061115 + cut -c5-6 + echo 2015061115 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061115 + cut -c7-8 + echo 2015061115 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061115 + cut -c9-10 + echo 2015061115 + NL_END_HOUR=15,15 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_09:00:00\',\'2015-06-11_09:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_15:00:00\',\'2015-06-11_15:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 09,09, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 15,15, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190555 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_24762.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121596 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-11_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-11_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-11_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061112 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=6 + export L_FCST_RANGE + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + L_START_DATE=2015061112 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 6 + 2> /dev/null + L_END_DATE=2015061118 + export L_END_DATE + cut -c1-4 + echo 2015061112 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061112 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061112 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061112 + L_START_HOUR=12 + export L_START_HOUR + cut -c1-4 + echo 2015061118 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061118 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061118 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061118 + L_END_HOUR=18 + export L_END_HOUR + cut -c1-4 + echo 2015061112 + cut -c1-4 + echo 2015061112 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061112 + cut -c5-6 + echo 2015061112 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061112 + cut -c7-8 + echo 2015061112 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061112 + cut -c9-10 + echo 2015061112 + NL_START_HOUR=12,12 + export NL_START_HOUR + cut -c1-4 + echo 2015061118 + cut -c1-4 + echo 2015061118 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061118 + cut -c5-6 + echo 2015061118 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061118 + cut -c7-8 + echo 2015061118 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061118 + cut -c9-10 + echo 2015061118 + NL_END_HOUR=18,18 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_12:00:00\',\'2015-06-11_12:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_18:00:00\',\'2015-06-11_18:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 12,12, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 18,18, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480, auxinput5_interval_m = 60,60, auxinput6_interval_m = 60480,60480, auxinput7_interval_m = 60,60, frames_per_auxinput2 = 1,1, frames_per_auxinput5 = 1,1, frames_per_auxinput6 = 1,1, frames_per_auxinput7 = 1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 02, s_we = 1,1, e_we = 196,256, s_sn = 1,1, e_sn = 168,229, s_vert = 1,1, e_vert = 37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000, dy = 27000,9000, grid_id = 1,2, parent_id = 0,1, i_parent_start = 1,80, j_parent_start = 1,45, parent_grid_ratio = 1,3, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true., cu_diag = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, non_hydrostatic = .true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, h_mom_adv_order = 5,5, v_mom_adv_order = 3,3, h_sca_adv_order = 5,5, v_sca_adv_order = 3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112, bioemdt = 1,1, photdt = 30,30, chemdt = 1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111, emiss_opt = 3,3, emiss_opt_vol = 0,0, chem_in_opt = 0,0, phot_opt = 3,3, gas_drydep_opt = 1,1, aer_drydep_opt = 1,1, bio_emiss_opt = 3,3, ne_area = 118, gas_bc_opt = 112,112, gas_ic_opt = 112,112, aer_bc_opt = 112,112, aer_ic_opt = 112,112, gaschem_onoff = 1,1, aerchem_onoff = 1,1, wetscav_onoff = 1,1, cldchem_onoff = 0,0, vertmix_onoff = 1,1, chem_conv_tr = 0,0, conv_tr_wetscav = 1,1, conv_tr_aqchem = 0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2, plumerisefire_frq = 15,15, scale_fire_emiss = .true.,.true., have_bcs_chem = .true.,.true., aer_ra_feedback = 1,1, chemdiag = 0,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false., fixed_ubc_press = 50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=42773 + JOBRND=19424_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=19424_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190638 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_16601.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121597 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-11_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-11_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-11_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061112 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=6 + export L_FCST_RANGE + L_START_DATE=2015061106 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + cut -c1-4 + echo 2015061106 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061106 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061106 + L_START_DAY=11 + export L_START_DAY + cut -c9-10 + echo 2015061106 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061112 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061112 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061112 + L_END_DAY=11 + export L_END_DAY + cut -c9-10 + echo 2015061112 + L_END_HOUR=12 + export L_END_HOUR + cut -c1-4 + echo 2015061106 + cut -c1-4 + echo 2015061106 + NL_START_YEAR=2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061106 + cut -c5-6 + echo 2015061106 + NL_START_MONTH=06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061106 + cut -c7-8 + echo 2015061106 + NL_START_DAY=11,11 + export NL_START_DAY + cut -c9-10 + echo 2015061106 + cut -c9-10 + echo 2015061106 + NL_START_HOUR=06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061112 + cut -c1-4 + echo 2015061112 + NL_END_YEAR=2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061112 + cut -c5-6 + echo 2015061112 + NL_END_MONTH=06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061112 + cut -c7-8 + echo 2015061112 + NL_END_DAY=11,11 + export NL_END_DAY + cut -c9-10 + echo 2015061112 + cut -c9-10 + echo 2015061112 + NL_END_HOUR=12,12 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-11_06:00:00\',\'2015-06-11_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-11_12:00:00\',\'2015-06-11_12:00:00\'' + export NL_END_DATE + P_DATE=2015061106 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + P_END_DATE=2015061112 + export P_END_DATE + [[ 2015061106 -le 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-11_03:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_09:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190877 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10501.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121598 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190905 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_330.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121599 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190933 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23178.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121600 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190960 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2643.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121601 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=190988 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3542.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121602 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191015 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9704.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121603 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191043 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121604 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191071 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16636.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121605 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191098 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7143.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121606 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_03:00:00', / &wrfvar22 time_window_max = '2015-06-11_09:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191126 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17654.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121607 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + P_DATE=2015061109 + export P_DATE + [[ 2015061109 -le 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_09:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-11_06:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_12:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10501.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191229 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31415.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121608 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_330.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191256 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16238.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121609 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23178.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191284 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12684.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121610 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2643.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191312 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23938.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121611 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3542.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191340 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11717.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121612 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9704.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191368 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23691.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121613 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21115.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191396 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22500.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121614 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16636.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191424 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18671.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121615 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7143.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191452 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121616 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17654.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_09:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_09:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_06:00:00', / &wrfvar22 time_window_max = '2015-06-11_12:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_09:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191480 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21764.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121617 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_09:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + P_DATE=2015061112 + export P_DATE + [[ 2015061112 -le 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_12:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-11_12:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 -3 -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-11_09:00:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 +3 -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-11_15:00:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31415.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7837.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121618 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16238.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191610 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7020.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121619 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12684.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191638 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26148.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121620 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23938.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191666 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17799.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121621 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11717.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191697 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121622 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23691.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191725 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12161.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121623 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22500.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191753 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12461.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121624 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18671.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191782 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6016.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121625 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7727.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191810 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8893.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121626 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 42773_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21764.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-11_12:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -f hhddmmyycc + NL_SEED_ARRAY1=0611061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0611061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-11_12:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-11_09:00:00', / &wrfvar22 time_window_max = '2015-06-11_15:00:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 6, run_minutes = 0, run_seconds = 0, start_year = 2015,2015, start_month = 06,06, start_day = 11,11, start_hour = 06,06, start_minute = 00,00, start_second = 00,00, end_year = 2015,2015, end_month = 06,06, end_day = 11,11, end_hour = 12,12, end_minute = 00,00, end_second = 00,00, interval_seconds = 10800, input_from_file = .true.,.true., history_interval = 60,60, frames_per_outfile = 1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 120, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8, ra_lw_physics = 4,4, ra_sw_physics = 4,4, radt = 15,3, sf_sfclay_physics = 1,1, sf_surface_physics = 2,2, bl_pbl_physics = 1,1, bldt = 0,0, cu_physics = 1,0, cudt = 0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0, diff_6th_factor = 0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000, dampcoef = 0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true., moist_adv_opt = 2,2, scalar_adv_opt = 2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2, scalar_adv_opt = 2,2, chem_adv_opt = 2,2, tke_adv_opt = 2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false., nested = .false.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-11_12:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=42773_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=42773_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=191838 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8053.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121627 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-11_12:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 3 + 2> /dev/null + P_DATE=2015061115 + export P_DATE + [[ 2015061115 -le 2015061112 ]] + NL_E_WE=196,256 + export NL_E_WE + NL_E_SN=168,229 + export NL_E_SN + NL_DX=27000,9000 + export NL_DX + NL_DY=27000,9000 + export NL_DY + NL_GRID_ID=1,2 + export NL_GRID_ID + NL_PARENT_ID=0,1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192228 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2471.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121628 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e001 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192239 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121629 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192451 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1806.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121630 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e002 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192463 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121631 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192676 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3041.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121632 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e003 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192688 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24427.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121633 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192903 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13875.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121634 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e004 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=192915 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5588.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121635 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193126 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8224.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121636 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e005 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193138 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32728.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121637 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193349 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13315.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121638 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e006 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193361 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15697.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121639 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193572 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18016.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121640 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e007 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193584 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_16747.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121641 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193798 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1039.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121642 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e008 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=193812 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23744.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121643 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=194023 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11514.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121644 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e009 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=194035 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1641.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121645 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_END_DATE=2015061112 + export L_END_DATE + TRANDOM=42773 + [[ 2015061106 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 + 2> /dev/null + NEXT_L_DATE=2015061109 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_09:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=194246 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4688.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121646 + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_09:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 + 2> /dev/null + NEXT_L_DATE=2015061112 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 3 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-11_12:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_09:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_12:00:00.e010 wrfinput_next + JOBRND=42773_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=42773_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=194258 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 42773_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29518.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121647 + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -lt 2015061112 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-11_06:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-11_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d02_2015-06-11_06:00:00 wrfinput_d02 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_FR=exo_coldens_d02 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d02_2015-06-11_06:00:00 wrfinput_d02 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 2, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_FR=wrf_season_wes_usgs_d02.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + LE_DATE=2015061112 + export LE_DATE + [[ 2015061106 -le 2015061112 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d02_2015-06-11_06:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061106 -eq 2015061106 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=194562 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_963.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121648 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-11_06:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061112 ]] + cut -c1-4 + echo 2015061112 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061112 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061112 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061112 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-11_12:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d01_2015-06-11_12:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d02_2015-06-11_12:00:00 wrfinput_d02 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ 2015061112 -eq 2015061106 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 2, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=42773 + JOBRND=19424_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=19424_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=196584 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 19424_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_16755.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121649 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_FR=wrfbiochemi_d02 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-11_12:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-11_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 6 + 2> /dev/null + L_DATE=2015061118 + export L_DATE + [[ 2015061118 -le 2015061112 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_FR=wrfinput_d02 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d02_2015-06-11_06:00:00 wrfinput_d02 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 2, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-11', end_date = '2015-06-11', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=42773 + JOBRND=19424_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=19424_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=198357 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_4283.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121650 + L_DATE=2015061106 + export L_DATE + [[ 2015061106 -le 2015061112 ]] + echo 2015061106 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-11_06:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_06:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_06:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_06:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_06:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061112 ]] + cut -c1-4 + echo 2015061107 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061107 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061107 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061107 + L_HH=07 + export L_HH + L_FILE_DATE=2015-06-11_07:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_07:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_07:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_07:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_07:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061107 1 + 2> /dev/null + L_DATE=2015061108 + export L_DATE + [[ 2015061108 -le 2015061112 ]] + cut -c1-4 + echo 2015061108 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061108 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061108 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061108 + L_HH=08 + export L_HH + L_FILE_DATE=2015-06-11_08:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_08:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_08:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_08:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_08:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061108 1 + 2> /dev/null + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -le 2015061112 ]] + cut -c1-4 + echo 2015061109 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061109 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061109 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061109 + L_HH=09 + export L_HH + L_FILE_DATE=2015-06-11_09:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_09:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_09:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_09:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_09:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 1 + 2> /dev/null + L_DATE=2015061110 + export L_DATE + [[ 2015061110 -le 2015061112 ]] + cut -c1-4 + echo 2015061110 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061110 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061110 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061110 + L_HH=10 + export L_HH + L_FILE_DATE=2015-06-11_10:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_10:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_10:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_10:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_10:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061110 1 + 2> /dev/null + L_DATE=2015061111 + export L_DATE + [[ 2015061111 -le 2015061112 ]] + cut -c1-4 + echo 2015061111 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061111 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061111 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061111 + L_HH=11 + export L_HH + L_FILE_DATE=2015-06-11_11:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_11:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_11:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_11:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_11:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061111 1 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061112 ]] + cut -c1-4 + echo 2015061112 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061112 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061112 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061112 + L_HH=12 + export L_HH + L_FILE_DATE=2015-06-11_12:00:00 + export L_FILE_DATE + DD_DATE=20150611 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-11_12:00:00 + export FILE_CR + FILE_FR=wrffirechemi_d02_2015-06-11_12:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-11_12:00:00 ]] + [[ ! -e wrffirechemi_d01_2015-06-11_12:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 1 + 2> /dev/null + L_DATE=2015061113 + export L_DATE + [[ 2015061113 -le 2015061112 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + LE_DATE=2015061112 + export LE_DATE + [[ 2015061106 -le 2015061112 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061112 ]] + cut -c1-4 + echo 2015061107 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061107 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061107 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061107 + L_HH=07 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_07:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_07:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_07:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061107 1 + 2> /dev/null + L_DATE=2015061108 + export L_DATE + [[ 2015061108 -le 2015061112 ]] + cut -c1-4 + echo 2015061108 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061108 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061108 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061108 + L_HH=08 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_08:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_08:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_08:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061108 1 + 2> /dev/null + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -le 2015061112 ]] + cut -c1-4 + echo 2015061109 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061109 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061109 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061109 + L_HH=09 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_09:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_09:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_09:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 1 + 2> /dev/null + L_DATE=2015061110 + export L_DATE + [[ 2015061110 -le 2015061112 ]] + cut -c1-4 + echo 2015061110 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061110 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061110 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061110 + L_HH=10 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_10:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_10:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_10:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061110 1 + 2> /dev/null + L_DATE=2015061111 + export L_DATE + [[ 2015061111 -le 2015061112 ]] + cut -c1-4 + echo 2015061111 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061111 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061111 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061111 + L_HH=11 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_11:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_11:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_11:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061111 1 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061112 ]] + cut -c1-4 + echo 2015061112 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061112 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061112 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061112 + L_HH=12 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-11_12:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-11_12:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00 + chmod a+rwx wrfchemi_d02_2015-06-11_12:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 1 + 2> /dev/null + L_DATE=2015061113 + export L_DATE + [[ 2015061113 -le 2015061112 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=42773 + JOBRND=19424_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 19424_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121651 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=06 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-11_06:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-11_06:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d01_2015-06-11_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 ./. + mv wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e000 + mv wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_d01_2015-06-11_06:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199033 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-11_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.199033 rm -f tmp.199033 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e000 set files = ( wrfinput_d01_2015-06-11_06:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199107 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.199107 rm -f tmp.199107 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e000 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.199107 rm -f tmp.199107 if ( wrfinput_d01_2015-06-11_06:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00.e000 echo wrfinput_d01_2015-06-11_06:00:00.e000 wrfinput_d01_2015-06-11_06:00:00.e000 ln -s wrfinput_d01_2015-06-11_06:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + mv wrfinput_d01_2015-06-11_06:00:00.e000 wrfinput_d01_2015-06-11_06:00:00 + mv wrfbdy_d01_2015-06-11_06:00:00.e000 wrfbdy_d01_2015-06-11_06:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=11 + export DAY + HOUR=06 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199195 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-11_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.199195 rm -f tmp.199195 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e001 set files = ( wrfinput_d01_2015-06-11_06:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199274 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.199274 rm -f tmp.199274 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e001 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.199274 rm -f tmp.199274 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199358 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-11_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.199358 rm -f tmp.199358 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e002 set files = ( wrfinput_d01_2015-06-11_06:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199555 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.199555 rm -f tmp.199555 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e002 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.199555 rm -f tmp.199555 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199640 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-11_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.199640 rm -f tmp.199640 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e003 set files = ( wrfinput_d01_2015-06-11_06:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199716 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.199716 rm -f tmp.199716 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e003 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.199716 rm -f tmp.199716 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199800 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-11_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.199800 rm -f tmp.199800 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e004 set files = ( wrfinput_d01_2015-06-11_06:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199878 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.199878 rm -f tmp.199878 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e004 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.199878 rm -f tmp.199878 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.199963 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-11_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.199963 rm -f tmp.199963 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e005 set files = ( wrfinput_d01_2015-06-11_06:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200036 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.200036 rm -f tmp.200036 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e005 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.200036 rm -f tmp.200036 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200120 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-11_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.200120 rm -f tmp.200120 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e006 set files = ( wrfinput_d01_2015-06-11_06:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200194 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.200194 rm -f tmp.200194 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e006 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.200194 rm -f tmp.200194 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200279 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-11_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.200279 rm -f tmp.200279 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e007 set files = ( wrfinput_d01_2015-06-11_06:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200357 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.200357 rm -f tmp.200357 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e007 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.200357 rm -f tmp.200357 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200443 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-11_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.200443 rm -f tmp.200443 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e008 set files = ( wrfinput_d01_2015-06-11_06:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200516 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.200516 rm -f tmp.200516 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e008 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.200516 rm -f tmp.200516 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200602 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-11_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.200602 rm -f tmp.200602 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e009 set files = ( wrfinput_d01_2015-06-11_06:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200675 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.200675 rm -f tmp.200675 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e009 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.200675 rm -f tmp.200675 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-11_06:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-11_06:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200762 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-11_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.200762 rm -f tmp.200762 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-11_06:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-11_06:00:00.e010 set files = ( wrfinput_d01_2015-06-11_06:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-11_06:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-11_06:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-11_06:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-11_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( IC == BC || IC == BOTH ) then if ( IC == IC ) then rm -f wrfinput_d01 if ( 0 ) then endif end if ( IC == BC ) then if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.200839 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-11_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.200839 rm -f tmp.200839 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-11_06:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-11_06:00:00.e010 set files = ( wrfbdy_d01_2015-06-11_06:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_d01_2015-06-11_06:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.200839 rm -f tmp.200839 if ( wrfinput_d01_2015-06-11_06:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_d01_2015-06-11_06:00:00.e010 echo wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_d01_2015-06-11_06:00:00.e010 wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_d01_2015-06-11_06:00:00.e010 ln -s wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-11_06:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-11_06:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-11_06:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-11_06:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-11_06:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then if ( BC == BC || BC == BOTH ) then rm -f wrfbdy_d01 if ( 0 ) then endif if ( BC == IC ) then end if ( BC == BC ) then rm -f wrfinput_d01 endif if ( -e run_mozbc_done ) then rm -f run_mozbc_done endif echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01_2015-06-11_06:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/real/wrfbdy_d01_2015-06-11_06:00:00 wrfbdy_d01_2015-06-11_06:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01_2015-06-11_06:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e001 wrfbdy_d01_2015-06-11_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e002 wrfinput_d01_2015-06-11_06:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e002 wrfbdy_d01_2015-06-11_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e003 wrfinput_d01_2015-06-11_06:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e003 wrfbdy_d01_2015-06-11_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e004 wrfinput_d01_2015-06-11_06:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e004 wrfbdy_d01_2015-06-11_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e005 wrfinput_d01_2015-06-11_06:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e005 wrfbdy_d01_2015-06-11_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e006 wrfinput_d01_2015-06-11_06:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e006 wrfbdy_d01_2015-06-11_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e007 wrfinput_d01_2015-06-11_06:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e007 wrfbdy_d01_2015-06-11_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e008 wrfinput_d01_2015-06-11_06:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e008 wrfbdy_d01_2015-06-11_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e009 wrfinput_d01_2015-06-11_06:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e009 wrfbdy_d01_2015-06-11_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-11_06:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-11_06:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_ic/wrfinput_d01_2015-06-11_06:00:00.e010 wrfinput_d01_2015-06-11_06:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_met_bc/wrfbdy_d01_2015-06-11_06:00:00.e010 wrfbdy_d01_2015-06-11_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 6 + 2> /dev/null + LE_DATE=2015061112 + export LE_DATE + [[ 2015061106 -le 2015061112 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e001 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e002 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e003 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e004 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e005 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e006 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e007 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e008 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e009 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_06:00:00 wrfchemi_d01_2015-06-11_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_06:00:00 wrffirechemi_d01_2015-06-11_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_06:00:00.e010 + [[ 06 -eq 00 ]] + [[ 06 -eq 06 ]] + rm -rf wrfbiochemi_d01_2015-06-11_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_06:00:00 wrfbiochemi_d01_2015-06-11_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=201373 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25856.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121652 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 1 + 2> /dev/null + L_DATE=2015061107 + export L_DATE + [[ 2015061107 -le 2015061112 ]] + cut -c1-4 + echo 2015061107 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061107 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061107 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061107 + L_HH=07 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_07:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_07:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_07:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e001 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e002 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e003 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e004 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e005 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e006 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e007 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e008 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e009 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_07:00:00 wrfchemi_d01_2015-06-11_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_07:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_07:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_07:00:00 wrffirechemi_d01_2015-06-11_07:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_07:00:00.e010 + [[ 07 -eq 00 ]] + [[ 07 -eq 06 ]] + [[ 07 -eq 12 ]] + [[ 07 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_07:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_07:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_07:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=201569 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_31972.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121653 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061107 1 + 2> /dev/null + L_DATE=2015061108 + export L_DATE + [[ 2015061108 -le 2015061112 ]] + cut -c1-4 + echo 2015061108 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061108 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061108 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061108 + L_HH=08 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_08:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_08:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_08:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e001 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e002 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e003 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e004 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e005 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e006 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e007 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e008 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e009 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_08:00:00 wrfchemi_d01_2015-06-11_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_08:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_08:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_08:00:00 wrffirechemi_d01_2015-06-11_08:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_08:00:00.e010 + [[ 08 -eq 00 ]] + [[ 08 -eq 06 ]] + [[ 08 -eq 12 ]] + [[ 08 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_08:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_08:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_08:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=201768 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_13938.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121654 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061108 1 + 2> /dev/null + L_DATE=2015061109 + export L_DATE + [[ 2015061109 -le 2015061112 ]] + cut -c1-4 + echo 2015061109 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061109 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061109 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061109 + L_HH=09 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_09:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_09:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_09:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e001 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e002 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e003 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e004 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e005 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e006 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e007 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e008 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e009 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_09:00:00 wrfchemi_d01_2015-06-11_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_09:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_09:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_09:00:00 wrffirechemi_d01_2015-06-11_09:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_09:00:00.e010 + [[ 09 -eq 00 ]] + [[ 09 -eq 06 ]] + [[ 09 -eq 12 ]] + [[ 09 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_09:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_09:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_09:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=202090 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_23905.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121655 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061109 1 + 2> /dev/null + L_DATE=2015061110 + export L_DATE + [[ 2015061110 -le 2015061112 ]] + cut -c1-4 + echo 2015061110 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061110 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061110 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061110 + L_HH=10 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_10:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_10:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_10:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e001 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e002 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e003 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e004 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e005 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e006 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e007 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e008 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e009 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_10:00:00 wrfchemi_d01_2015-06-11_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_10:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_10:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_10:00:00 wrffirechemi_d01_2015-06-11_10:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_10:00:00.e010 + [[ 10 -eq 00 ]] + [[ 10 -eq 06 ]] + [[ 10 -eq 12 ]] + [[ 10 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_10:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_10:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_10:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=202286 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_942.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121656 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061110 1 + 2> /dev/null + L_DATE=2015061111 + export L_DATE + [[ 2015061111 -le 2015061112 ]] + echo 2015061111 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061111 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061111 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061111 + L_HH=11 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_11:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_11:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_11:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e001 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e002 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e003 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e004 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e005 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e006 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e007 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e008 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e009 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_11:00:00 wrfchemi_d01_2015-06-11_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_11:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_11:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_11:00:00 wrffirechemi_d01_2015-06-11_11:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_11:00:00.e010 + [[ 11 -eq 00 ]] + [[ 11 -eq 06 ]] + [[ 11 -eq 12 ]] + [[ 11 -eq 18 ]] + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_11:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_11:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_11:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=202487 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_13516.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121657 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061111 1 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061112 ]] + cut -c1-4 + echo 2015061112 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061112 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061112 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061112 + L_HH=12 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061106 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-11_12:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-11_12:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-11_12:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-11_06:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e001 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e002 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e003 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e004 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e005 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e006 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e007 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e008 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e009 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-11_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chemi/wrfchemi_d01_2015-06-11_12:00:00 wrfchemi_d01_2015-06-11_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-11_12:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-11_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_fire/wrffirechemi_d01_2015-06-11_12:00:00 wrffirechemi_d01_2015-06-11_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-11_12:00:00.e010 + [[ 12 -eq 00 ]] + [[ 12 -eq 06 ]] + [[ 12 -eq 12 ]] + rm -rf wrfbiochemi_d01_2015-06-11_12:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_bio/wrfbiochemi_d01_2015-06-11_12:00:00 wrfbiochemi_d01_2015-06-11_12:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-11_12:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour', nnum_mem=10, wrfchemi='wrfchemi_d01_2015-06-11_12:00:00', wrffirechemi='wrffirechemi_d01_2015-06-11_12:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-11_12:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=42773 + JOBRND=19424_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=19424_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=202715 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21444.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121658 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 1 + 2> /dev/null + L_DATE=2015061113 + export L_DATE + [[ 2015061113 -le 2015061112 ]] + rm -rf 'wrfchemi_d01_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-11_06:00:00.e001 wrfchemi_d01_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/airnow_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/airnow_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/airnow_o3_obs + [[ ! -e airnow_o3_hourly_csv_data ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data/hourly_44201_2015.csv ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + [[ 06 -eq 0 ]] + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=11 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061106 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=11 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILENAME=$'\'hourly_44201_2015.csv\'' + export NL_FILENAME + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/AIRNOW/work/airnow_o3_ascii_to_obs ./. + rm -rf create_airnow_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_airnow_input_nml.ksh + rm -f create_airnow_obs_nml.nl + touch create_airnow_obs_nml.nl + cat + 1> create_airnow_obs_nml.nl 0<< \EOF &create_airnow_obs_nml year0=2015 month0=06 day0=11 hour0=06 beg_year=2015 beg_mon=06 beg_day=11 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=11 end_hour=09 end_min=0 end_sec=0 file_in='hourly_44201_2015.csv' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_co=.false. use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files =.true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq2008022206',obs_seq2008022212', filename_out = 'obs_seq_ncep_2008022212' / EOF + ./airnow_o3_ascii_to_obs + 1> index.file 2>& 1 + AIRNOW_OUT_FILE=airnow_obs_seq + export AIRNOW_OUT_FILE + AIRNOW_ARCH_FILE=obs_seq_airnow_o3_2015061106.out + export AIRNOW_ARCH_FILE + [[ -s airnow_obs_seq ]] + cp airnow_obs_seq obs_seq_airnow_o3_2015061106.out + rm airnow_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/tolnet_o3_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/tolnet_o3_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/tolnet_o3_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150610_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R0.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150611_R1.dat /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data/TOLNet-O3Lidar_HUBV_20150612_R0.dat ./. + ASIM_MIN_MN=0 + export ASIM_MIN_MN + ASIM_MIN_SS=1 + export ASIM_MIN_SS + ASIM_MAX_MN=0 + export ASIM_MAX_MN + ASIM_MAX_SS=0 + export ASIM_MAX_SS + L_YYYY=2015 + export L_YYYY + L_MM=06 + export L_MM + L_DD=11 + export L_DD + L_HH=06 + export L_HH + D_DATE=2015061106 + export D_DATE + NL_YEAR=2015 + export NL_YEAR + NL_MONTH=06 + export NL_MONTH + NL_DAY=11 + export NL_DAY + NL_HOUR=06 + export NL_HOUR + NL_FILE_PREFIX=$'\'TOLNet-O3Lidar_HUBV_\'' + export NL_FILE_PREFIX + NL_FILE_POSTFIX=$'\'_R0.dat\'' + export NL_FILE_POSTFIX + NL_LAT_MN=10. + export NL_LAT_MN + NL_LAT_MX=80. + export NL_LAT_MX + NL_LON_MN=-110 + export NL_LON_MN + NL_LON_MX=-50 + export NL_LON_MX + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/TOLNET/work/tolnet_o3_ascii_to_obs ./. + rm -rf create_tolnet_obs_nml.nl + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_tolnet_input_nml.ksh + rm -f create_tolnet_obs_nml.nl + touch create_tolnet_obs_nml.nl + cat + 1> create_tolnet_obs_nml.nl 0<< \EOF &create_tolnet_obs_nml year0=2015 month0=06 day0=11 hour0=06 beg_year=2015 beg_mon=06 beg_day=11 beg_hour=03 beg_min=0 beg_sec=1 end_year=2015 end_mon=06 end_day=11 end_hour=09 end_min=0 end_sec=0 file_prefix='TOLNet-O3Lidar_HUBV_' file_postfix='_R0.dat' lat_mn=10. lat_mx=80. lon_mn=-110 lon_mx=-50 use_log_o3=.false. / EOF + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false. / &obs_kind_nml / &assim_model_nml write_binary_restart_files = .true. / &model_nml / &location_nml / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out' / &preprocess_nml input_obs_kind_mod_file = '../../obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '../../obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '../../obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '../../obs_def/obs_def_mod.f90', input_files = '../../obs_def/obs_def_reanalysis_bufr_mod.f90', '../../obs_def/obs_def_gps_mod.f90', '../../obs_def/obs_def_eval_mod.f90' / &merge_obs_seq_nml num_input_files = 2, filename_seq = 'obs_seq' filename_out = 'obs_seq_ncep_' / EOF + ./tolnet_o3_ascii_to_obs + 1> index.file 2>& 1 + TOLNET_OUT_FILE=tolnet_obs_seq + export TOLNET_OUT_FILE + TOLNET_ARCH_FILE=obs_seq_tolnet_o3_2015061106.out + export TOLNET_ARCH_FILE + [[ -s tolnet_obs_seq ]] + cp tolnet_obs_seq obs_seq_tolnet_o3_2015061106.out + rm tolnet_obs_seq + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/prepbufr_met_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/prepbufr_met_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/prepbufr_met_obs + L_DATE=2015061106 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +24 + 2> /dev/null + E_DATE=2015061206 + export E_DATE + [[ 2015061106 -le 2015061206 ]] + cut -c1-4 + echo 2015061106 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061106 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061106 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061106 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061106 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t06z.nr prepqm15061106 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061106 +6 + 2> /dev/null + L_DATE=2015061112 + export L_DATE + [[ 2015061112 -le 2015061206 ]] + cut -c1-4 + echo 2015061112 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061112 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061112 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061112 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061112 + L_HH=12 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t12z.nr prepqm15061112 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061112 +6 + 2> /dev/null + L_DATE=2015061118 + export L_DATE + [[ 2015061118 -le 2015061206 ]] + cut -c1-4 + echo 2015061118 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061118 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061118 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061118 + L_DD=11 + export L_DD + cut -c9-10 + echo 2015061118 + L_HH=18 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150611.t18z.nr prepqm15061118 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061118 +6 + 2> /dev/null + L_DATE=2015061200 + export L_DATE + [[ 2015061200 -le 2015061206 ]] + cut -c1-4 + echo 2015061200 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061200 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061200 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061200 + L_DD=12 + export L_DD + cut -c9-10 + echo 2015061200 + L_HH=00 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150612.t00z.nr prepqm15061200 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150612.t00z.nr’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061200 +6 + 2> /dev/null + L_DATE=2015061206 + export L_DATE + [[ 2015061206 -le 2015061206 ]] + cut -c1-4 + echo 2015061206 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061206 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061206 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061206 + L_DD=12 + export L_DD + cut -c9-10 + echo 2015061206 + L_HH=06 + export L_HH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150612.t06z.nr prepqm15061206 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150612.t06z.nr’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061206 +6 + 2> /dev/null + L_DATE=2015061212 + export L_DATE + [[ 2015061212 -le 2015061206 ]] + rm -rf input.nml + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/input.nml ./. + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/work/prepbufr_RT.csh 2015 6 11 11 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/prep_bufr/exe + 1> index.file 2>& 1 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_ncep_ascii_to_obs_input_nml_RT.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &ncepobs_nml year = 2015, month = 06, day = 11, tot_days = 1, max_num = 800000, select_obs = 0, daily_file = .false., ObsBase = 'temp_obs.', ADPUPA = .true., AIRCFT = .true., AIRCAR = .true., SATEMP = .true., SFCSHP = .true., ADPSFC = .true., SATWND = .true., obs_U = .true., obs_V = .true., obs_T = .true., obs_PS = .true., obs_QV = .true., lon1 = 250., lon2 = 310., lat1 = 10., lat2 = 80., obs_time = .true. / &obs_sequence_nml write_binary_obs_sequence = .false. / &assim_model_nml write_binary_restart_files = .true. / &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out' / &model_nml / &location_nml / &obs_kind_nml / &obs_def_gps_nml max_gpsro_obs = 100000 / &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file= '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90' / EOF + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/observations/NCEP/ascii_to_obs/work/create_real_obs + 1> index_create 2>& 1 + mv obs_seq2015061106 obs_seq_prep_2015061106.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/combine_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/combine_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/combine_obs + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/obs_sequence_tool ./. + NUM_FILES=0 + export NUM_FILES + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/prepbufr_met_obs/obs_seq_prep_2015061106.out ]] + [[ -n true ]] + (( NUM_FILES=0+1 )) + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/prepbufr_met_obs/obs_seq_prep_2015061106.out ./obs_seq_MET_2015061106.out + FILE_LIST[1]=obs_seq_MET_2015061106.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/airnow_o3_obs/obs_seq_airnow_o3_2015061106.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/airnow_o3_obs/obs_seq_airnow_o3_2015061106.out ./obs_seq_AIR_O3_2015061106.out + (( NUM_FILES=1+1 )) + FILE_LIST[2]=obs_seq_AIR_O3_2015061106.out + export FILE_LIST + [[ -s /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/tolnet_o3_obs/obs_seq_tolnet_o3_2015061106.out ]] + [[ -n true ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/tolnet_o3_obs/obs_seq_tolnet_o3_2015061106.out ./obs_seq_TOL_O3_2015061106.out + (( NUM_FILES=2+1 )) + FILE_LIST[3]=obs_seq_TOL_O3_2015061106.out + export FILE_LIST + NL_NUM_INPUT_FILES=3 + export NL_NUM_INPUT_FILES + [[ 3 -eq 8 ]] + [[ 3 -eq 7 ]] + [[ 3 -eq 6 ]] + [[ 3 -eq 5 ]] + [[ 3 -eq 4 ]] + [[ 3 -eq 3 ]] + NL_FILENAME_SEQ=$'\'obs_seq_MET_2015061106.out\',\'obs_seq_AIR_O3_2015061106.out\',\'obs_seq_TOL_O3_2015061106.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.proc\'' + export NL_FILENAME_OUT + NL_FIRST_OBS_DAYS=151371 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=10800 + export NL_FIRST_OBS_SECONDS + NL_LAST_OBS_DAYS=151371 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=32400 + export NL_LAST_OBS_SECONDS + NL_SYNONYMOUS_COPY_LIST=$'\'NCEP BUFR observation\',\'MOPITT CO observation\',\'IASI CO observation\',\'IASI O3 observation\',\'AIRNOW observation\',\'TOLNET observation\',\'MODIS observation\'' + export NL_SYNONYMOUS_COPY_LIST + NL_SYNONYMOUS_QC_LIST=$'\'NCEP QC index\',\'MOPITT CO QC index\',\'IASI CO QC index\',\'IASI O3 QC index\',\'AIRNOW QC index\',\'TOLNET QC index\',\'MODIS QC index\'' + export NL_SYNONYMOUS_QC_LIST + rm -rf input.nml + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_dart_input_nml.ksh + rm -f input.nml + touch input.nml + cat + 1> input.nml 0<< \EOF &obs_sequence_tool_nml num_input_files = 3 filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types =.false., print_only =.false., synonymous_copy_list = 'NCEP BUFR observation','MOPITT CO observation','IASI CO observation','IASI O3 observation','AIRNOW observation','TOLNET observation','MODIS observation', synonymous_qc_list = 'NCEP QC index','MOPITT CO QC index','IASI CO QC index','IASI O3 QC index','AIRNOW QC index','TOLNET QC index','MODIS QC index', min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., / &obs_kind_nml assimilate_these_obs_types = 'RADIOSONDE_TEMPERATURE', 'RADIOSONDE_U_WIND_COMPONENT', 'RADIOSONDE_V_WIND_COMPONENT', 'ACARS_U_WIND_COMPONENT', 'ACARS_V_WIND_COMPONENT', 'ACARS_TEMPERATURE', 'AIRCRAFT_U_WIND_COMPONENT', 'AIRCRAFT_V_WIND_COMPONENT', 'AIRCRAFT_TEMPERATURE', 'SAT_U_WIND_COMPONENT', 'SAT_V_WIND_COMPONENT', 'MODIS_AOD_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MOPITT_CO_RETRIEVAL', 'AIRNOW_O3', 'TOLNET_O3', / &location_nml horiz_dist_only = .true., vert_normalization_pressure = 187500.0, vert_normalization_height = 5000000.0, vert_normalization_level = 2666.7, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / &obs_sequence_nml write_binary_obs_sequence = .false. / &utilities_nml TERMLEVEL = 1, logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', module_details = .false. / &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + ./obs_sequence_tool Starting program obs_sequence_tool Initializing the utilities module. Trying to log to unit 10 Trying to open file dart_log.out -------------------------------------- Starting ... at YYYY MM DD HH MM SS = 2019 8 4 23 52 13 Program obs_sequence_tool -------------------------------------- set_nml_output Echo NML values to log file only Trying to open namelist log dart_log.nml obs_sequence_tool "num_input_files" is a DEPRECATED namelist item and is ignored. obs_sequence_tool ... the count of input files is set by the number of filenames specified. location_mod: using code with optimized cutoffs location_mod: Ignoring vertical separation when computing distances; horizontal distances only Excluding observations before: day=151371, sec=10800 which is Gregorian day: 2015 Jun 11 03:00:00 Excluding observations after: day=151371, sec=32400 which is Gregorian day: 2015 Jun 11 09:00:00 ------------------------------------------------------ -------------- ASSIMILATE_THESE_OBS_TYPES -------------- RADIOSONDE_TEMPERATURE RADIOSONDE_U_WIND_COMPONENT RADIOSONDE_V_WIND_COMPONENT ACARS_U_WIND_COMPONENT ACARS_V_WIND_COMPONENT ACARS_TEMPERATURE AIRCRAFT_U_WIND_COMPONENT AIRCRAFT_V_WIND_COMPONENT AIRCRAFT_TEMPERATURE SAT_U_WIND_COMPONENT SAT_V_WIND_COMPONENT MODIS_AOD_RETRIEVAL IASI_CO_RETRIEVAL IASI_O3_RETRIEVAL MOPITT_CO_RETRIEVAL AIRNOW_O3 TOLNET_O3 -------------- EVALUATE_THESE_OBS_TYPES -------------- ------------------------------------------------------ obs_sequence_tool Skipping: all obs in obs_seq_TOL_O3_2015061106.out are before first_obs time obs_sequence_tool No obs used from input sequence file obs_seq_TOL_O3_2015061106.out obs_sequence_tool Starting to process input sequence file obs_seq_MET_2015061106.out inserted number 20000 of 54402 inserted number 40000 of 54402 -------------- Obs seq file # : 1 Number of obs in previous seq : 0 Number of obs to be inserted : 54402 Number of obs really inserted : 54402 --------------------------------------------------------- obs_sequence_tool Starting to process input sequence file obs_seq_AIR_O3_2015061106.out obs_sequence_tool different copy metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP BUFR observation obs_sequence_tool ... one is: AIRNOW observation obs_sequence_tool different qc metadata strings ok because both on synonymous list obs_sequence_tool ... one is: NCEP QC index obs_sequence_tool ... one is: AIRNOW QC index -------------- Obs seq file # : 2 Number of obs in previous seq : 54402 Number of obs to be inserted : 5451 Number of obs really inserted : 5451 --------------------------------------------------------- obs_sequence_tool Starting to process output sequence file obs_seq.proc Total number of obs inserted : 59853 Actual number of obs in the new seq file : 59853 Processing sequence file obs_seq.proc Data Metadata: NCEP BUFR observation QC Metadata: NCEP QC index First obs time: day=151371, sec=10861 Gregorian day: 2015 Jun 11 03:01:01 Last obs time: day=151371, sec=32400 Gregorian day: 2015 Jun 11 09:00:00 Number of obs processed : 59853 --------------------------------------------------------- RADIOSONDE_U_WIND_COMPONENT 107 obs RADIOSONDE_V_WIND_COMPONENT 107 obs RADIOSONDE_TEMPERATURE 102 obs RADIOSONDE_SPECIFIC_HUMIDITY 102 obs AIRCRAFT_U_WIND_COMPONENT 30 obs AIRCRAFT_V_WIND_COMPONENT 30 obs AIRCRAFT_TEMPERATURE 245 obs MARINE_SFC_U_WIND_COMPONENT 3182 obs MARINE_SFC_V_WIND_COMPONENT 3182 obs MARINE_SFC_TEMPERATURE 3480 obs MARINE_SFC_SPECIFIC_HUMIDITY 896 obs LAND_SFC_U_WIND_COMPONENT 578 obs LAND_SFC_V_WIND_COMPONENT 578 obs LAND_SFC_TEMPERATURE 587 obs LAND_SFC_SPECIFIC_HUMIDITY 547 obs SAT_U_WIND_COMPONENT 18160 obs SAT_V_WIND_COMPONENT 18160 obs RADIOSONDE_SURFACE_ALTIMETER 2 obs MARINE_SFC_ALTIMETER 3739 obs LAND_SFC_ALTIMETER 588 obs AIRNOW_O3 5451 obs write_obs_seq opening formatted file obs_seq.proc write_obs_seq closed file obs_seq.proc obs_sequence_tool Finished successfully. -------------------------------------- Finished ... at YYYY MM DD HH MM SS = 2019 8 4 23 52 15 -------------------------------------- + mv obs_seq.proc obs_seq_comb_2015061106.out + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/preprocess_obs ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/preprocess_obs + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/preprocess_obs + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_icbc/wrfinput_d01_2015-06-11_06:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-11_06:00:00.e001 wrfbiochemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e001 wrffirechemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_dart_obs_preprocess ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/WRF_DART_utilities/wrf_dart_obs_preprocess.nml ./. + rm -rf input.nml + NL_DEFAULT_STATE_VARIABLES=.true. + export NL_DEFAULT_STATE_VARIABLES + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .true., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + rm -rf obs_seq.old + rm -rf obs_seq.new + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/combine_obs/obs_seq_comb_2015061106.out obs_seq.old + rm -rf job.ksh + touch job.ksh + RANDOM=42773 + JOBRND=19424_preproc + export JOBRND + cat + 0<< \EOFF #!/bin/ksh -aeux #SBATCH --job-name 19424_preproc #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 19424_preproc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # ./wrf_dart_obs_preprocess 151371 21600 > index_html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOFF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121659 + mv obs_seq.new obs_seq_comb_filtered_2015061106.out + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/filter ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/system_simulation/final_full_precomputed_tables/final_full.10 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + [[ 2015061106 -eq 2015061006 ]] + BACKGND_FCST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr + export BACKGND_FCST_DIR + [[ -n /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/preprocess_obs/obs_seq_comb_filtered_2015061106.out ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/preprocess_obs/obs_seq_comb_filtered_2015061106.out obs_seq.out + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e001 + mkdir wrk_wrf_e001 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e001 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0001\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0001', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e002 + mkdir wrk_wrf_e002 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e002 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0002\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0002', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e003 + mkdir wrk_wrf_e003 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e003 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0003\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0003', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e004 + mkdir wrk_wrf_e004 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e004 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0004\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0004', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e005 + mkdir wrk_wrf_e005 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e005 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0005\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0005', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_06:00:00’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-11_06:00:00’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e006 + mkdir wrk_wrf_e006 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e006 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0006\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0006', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_06:00:00’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-11_06:00:00’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e007 + mkdir wrk_wrf_e007 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e007 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0007\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0007', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e008 + mkdir wrk_wrf_e008 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e008 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0008\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0008', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_06:00:00’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-11_06:00:00’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e009 + mkdir wrk_wrf_e009 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e009 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0009\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0009', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + rm -rf wrk_wrf_e010 + mkdir wrk_wrf_e010 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e010 + NL_DART_RESTART_NAME=$'\'../filter_ic_old.0010\'' + export NL_DART_RESTART_NAME + NL_PRINT_DATA_RANGES=.false. + export NL_PRINT_DATA_RANGES + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/wrf_to_dart ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-11_06:00:00 ../wrfinput_d01_e010 + let MEM=10+1 + [[ 11 -le 10 ]] + let IMEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e001 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e001 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e001 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e002 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e002 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e002 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e003 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e003 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e003 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e004 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e004 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e004 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e005 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e005 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e005 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e006 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e006 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e006 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e007 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e007 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e007 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e008 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e008 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e008 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e009 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e009 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e009 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e010 + LL_DATE=2015061106 + export LL_DATE + LL_END_DATE=2015061106 + export LL_END_DATE + echo 2015061106 + cut -c1-4 + LL_YY=2015 + export LL_YY + echo 2015061106 + cut -c5-6 + LL_MM=06 + export LL_MM + echo 2015061106 + cut -c7-8 + LL_DD=11 + export LL_DD + echo 2015061106 + cut -c9-10 + LL_HH=06 + export LL_HH + LL_FILE_DATE=2015-06-11_06:00:00 + export LL_FILE_DATE + [[ 2015061106 -le 2015061006 ]] + [[ .false. == .false. ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrfchemi_d01_2015-06-11_06:00:00.e010 wrfchemi_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-11_06:00:00.e010 wrffirechemi_d01 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01 + let IMEM=10+1 + [[ 11 -le 10 ]] + TRANDOM=42773 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e001 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206147 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_16844.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121660 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e002 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206151 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_8023.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121661 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e003 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206155 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_9635.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121662 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e004 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206159 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_1390.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121663 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e005 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206163 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_5005.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121664 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e006 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206167 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_31573.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121665 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e007 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206171 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_18373.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121666 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e008 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206175 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_4942.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121667 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e009 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206179 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_10568.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121668 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter/wrk_wrf_e010 + JOBRND=42773_wrf2drt + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 42773_wrf2drt normal+ 01:40:00 1 1 wrf_to_dart SERIAL + JOBID=42773_wrf2drt + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=wrf_to_dart + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=206184 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 42773_wrf2drt #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 42773_wrf2drt.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./wrf_to_dart > index_6142.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1121669 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061106/dart_filter + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 42773 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_seq_list = 'null', filename_out = 'obs_seq.proc', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 3, filename_seq = 'obs_seq_MET_2015061106.out','obs_seq_AIR_O3_2015061106.out','obs_seq_TOL_O3_2015061106.out', filename_out = 'obs_seq.proc', first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10800, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp wrk_wrf_e001/wrfinput_d01 ./ + cp wrk_wrf_e001/wrfchemi_d01 ./ + cp wrk_wrf_e001/wrffirechemi_d01 ./ + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-11_06:00:00 wrfinput_d01 + true + [[ 2015061106 -eq 2015061006 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + [[ 2015061106 -ne 2015061006 ]] + [[ 2 != 0 ]] + INF_OUT_FILE_NAME_PRIOR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/prior_inflate_ic_new + export INF_OUT_FILE_NAME_PRIOR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_6hour/2015061100/dart_filter/prior_inflate_ic_new prior_inflate_ic_old + [[ 0 != 0 ]] + echo 2015061103 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 10800 + (( temp[1]=10800+1 )) + NL_FIRST_OBS_DAYS=151371 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=10801 + export NL_FIRST_OBS_SECONDS + echo 2015061109 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151371 32400 + NL_LAST_OBS_DAYS=151371 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=32400 + export NL_LAST_OBS_SECONDS + NL_NUM_INPUT_FILES=1 + export NL_NUM_INPUT_FILES + NL_FILENAME_SEQ=$'\'obs_seq.out\'' + export NL_FILENAME_SEQ + NL_FILENAME_OUT=$'\'obs_seq.processed\'' + export NL_FILENAME_OUT + NL_MOPITT_CO_RETRIEVAL_TYPE=$'\'RETR\'' + export NL_MOPITT_CO_RETRIEVAL_TYPE + NL_IASI_CO_RETRIEVAL_TYPE=$'\'RAWR\'' + export NL_IASI_CO_RETRIEVAL_TYPE + NL_USE_LOG_CO=.false. + export NL_USE_LOG_CO + NL_USE_LOG_O3=.false. + export NL_USE_LOG_O3 + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 01, calendar_type = 3, assimilation_period_seconds = 21600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 11, 6, 0, 0, last_bin_center = 2015, 6, 11, 6, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151371, first_obs_seconds = 10801, last_obs_days = 151371, last_obs_seconds = 32400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151371, new_advance_secs = 43200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = '../filter_ic_old.0010', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + rm -rf filter_apm.nml + cat + 0<< \EOF &filter_apm_nml special_outlier_threshold=3. / EOF 1> filter_apm.nml + RANDOM=42773 + JOBRND=19424_filter + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19424_filter normal+ 03:30:00 2-4 48 filter PARALLEL + JOBID=19424_filter + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=03:30:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=filter + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=206592 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19424_filter #SBATCH --qos normal+ #SBATCH --time 03:30:00 #SBATCH --output 19424_filter.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./filter > index_22128.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1121670 + [[ ! -f Prior_Diag.nc ]] + echo APM: ERROR in DART FILTER EXIT APM: ERROR in DART FILTER EXIT + exit